JUNB.H12INVITRO.0.PM.A motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUNB.H12INVITRO.0.PM.A
Gene (human)	JUNB (GeneCards)
Gene synonyms (human)
Gene (mouse)	Junb
Gene synonyms (mouse)	Jun-b
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	A

Motif length	11
Consensus	bRTGAGTCAYn
GC content	45.09%
Information content (bits; total / per base)	14.548 / 1.323
Data sources	ChIP-Seq + Methyl-HT-SELEX
Aligned words	6156

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	22 (137)	0.908	0.978	0.84	0.956	0.892	0.967	3.47	4.563	172.721	520.658
Mouse	25 (148)	0.888	0.958	0.817	0.918	0.861	0.946	3.109	3.967	176.864	387.42

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Overall, 2 experiments	median	0.769	0.748	0.672	0.659	0.608	0.604
Overall, 2 experiments	best	0.885	0.872	0.736	0.734	0.642	0.649
Methyl HT-SELEX, 1 experiments	median	0.885	0.872	0.736	0.734	0.642	0.649
Methyl HT-SELEX, 1 experiments	best	0.885	0.872	0.736	0.734	0.642	0.649
Non-Methyl HT-SELEX, 1 experiments	median	0.654	0.624	0.609	0.584	0.575	0.56
Non-Methyl HT-SELEX, 1 experiments	best	0.654	0.624	0.609	0.584	0.575	0.56

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 2	0.534	0.082	0.025	0.058

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.2
HGNC	HGNC:6205
MGI	MGI:96647
EntrezGene (human)	GeneID:3726 (SSTAR profile)
EntrezGene (mouse)	GeneID:16477 (SSTAR profile)
UniProt ID (human)	JUNB_HUMAN
UniProt ID (mouse)	JUNB_MOUSE
UniProt AC (human)	P17275 (TFClass)
UniProt AC (mouse)	P09450 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	22 human, 25 mouse
HT-SELEX	1
Methyl-HT-SELEX	1

PCM	JUNB.H12INVITRO.0.PM.A.pcm
PWM	JUNB.H12INVITRO.0.PM.A.pwm
PFM	JUNB.H12INVITRO.0.PM.A.pfm
Alignment	JUNB.H12INVITRO.0.PM.A.words.tsv
Threshold to P-value map	JUNB.H12INVITRO.0.PM.A.thr
Motif in other formats
JASPAR format	JUNB.H12INVITRO.0.PM.A_jaspar_format.txt
MEME format	JUNB.H12INVITRO.0.PM.A_meme_format.meme
Transfac format	JUNB.H12INVITRO.0.PM.A_transfac_format.txt
Homer format	JUNB.H12INVITRO.0.PM.A_homer_format_0.001.txt JUNB.H12INVITRO.0.PM.A_homer_format_0.0005.txt JUNB.H12INVITRO.0.PM.A_homer_format_0.0001.txt

PCM

	A	C	G	T
01	928.75	1383.75	2446.75	1396.75
02	3933.5	129.5	1947.5	145.5
03	5.0	507.0	38.0	5606.0
04	15.0	3.0	6029.0	109.0
05	6005.0	139.0	1.0	11.0
06	4.0	0.0	6152.0	0.0
07	0.0	0.0	65.0	6091.0
08	78.0	6030.0	40.0	8.0
09	5775.0	0.0	381.0	0.0
10	93.0	1107.0	250.0	4706.0
11	1423.25	1900.25	1982.25	850.25

PFM

	A	C	G	T
01	0.151	0.225	0.397	0.227
02	0.639	0.021	0.316	0.024
03	0.001	0.082	0.006	0.911
04	0.002	0.0	0.979	0.018
05	0.975	0.023	0.0	0.002
06	0.001	0.0	0.999	0.0
07	0.0	0.0	0.011	0.989
08	0.013	0.98	0.006	0.001
09	0.938	0.0	0.062	0.0
10	0.015	0.18	0.041	0.764
11	0.231	0.309	0.322	0.138

PWM

	A	C	G	T
01	-0.504	-0.106	0.463	-0.097
02	0.938	-2.46	0.235	-2.345
03	-5.369	-1.108	-3.647	1.292
04	-4.496	-5.695	1.364	-2.629
05	1.36	-2.39	-6.183	-4.762
06	-5.519	-6.56	1.385	-6.56
07	-6.56	-6.56	-3.133	1.375
08	-2.956	1.365	-3.598	-5.02
09	1.321	-6.56	-1.392	-6.56
10	-2.785	-0.329	-1.81	1.117
11	-0.078	0.211	0.253	-0.592

Standard thresholds

P-value	Threshold
0.001	1.88763
0.0005	3.409675
0.0001	6.498185