JUN.H12RSNP.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUN.H12RSNP.0.P.B
Gene (human)	JUN (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jun
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	11
Consensus	dRTGAGTCAYh
GC content	45.07%
Information content (bits; total / per base)	14.336 / 1.303
Data sources	ChIP-Seq
Aligned words	1000

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	64 (409)	0.813	0.972	0.774	0.95	0.804	0.972	3.35	5.46	165.215	551.585
Mouse	29 (173)	0.859	0.938	0.796	0.906	0.847	0.931	3.25	4.32	179.201	362.114

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.617	0.601	0.569	0.56	0.545	0.54
Non-Methyl HT-SELEX, 1 experiments	best	0.617	0.601	0.569	0.56	0.545	0.54

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	12.544	26.667	0.294	0.304

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.871	0.731	0.884	0.652
batch 2	0.6	0.268	0.217	0.111

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.1
HGNC	HGNC:6204
MGI	MGI:96646
EntrezGene (human)	GeneID:3725 (SSTAR profile)
EntrezGene (mouse)	GeneID:16476 (SSTAR profile)
UniProt ID (human)	JUN_HUMAN
UniProt ID (mouse)	JUN_MOUSE
UniProt AC (human)	P05412 (TFClass)
UniProt AC (mouse)	P05627 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	64 human, 29 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	JUN.H12RSNP.0.P.B.pcm
PWM	JUN.H12RSNP.0.P.B.pwm
PFM	JUN.H12RSNP.0.P.B.pfm
Alignment	JUN.H12RSNP.0.P.B.words.tsv
Threshold to P-value map	JUN.H12RSNP.0.P.B.thr
Motif in other formats
JASPAR format	JUN.H12RSNP.0.P.B_jaspar_format.txt
MEME format	JUN.H12RSNP.0.P.B_meme_format.meme
Transfac format	JUN.H12RSNP.0.P.B_transfac_format.txt
Homer format	JUN.H12RSNP.0.P.B_homer_format_0.001.txt JUN.H12RSNP.0.P.B_homer_format_0.0005.txt JUN.H12RSNP.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	234.0	159.0	397.0	210.0
02	548.0	101.0	340.0	11.0
03	4.0	4.0	16.0	976.0
04	2.0	6.0	967.0	25.0
05	967.0	14.0	8.0	11.0
06	6.0	0.0	982.0	12.0
07	2.0	4.0	4.0	990.0
08	5.0	985.0	8.0	2.0
09	974.0	16.0	3.0	7.0
10	8.0	308.0	39.0	645.0
11	210.0	426.0	171.0	193.0

PFM

	A	C	G	T
01	0.234	0.159	0.397	0.21
02	0.548	0.101	0.34	0.011
03	0.004	0.004	0.016	0.976
04	0.002	0.006	0.967	0.025
05	0.967	0.014	0.008	0.011
06	0.006	0.0	0.982	0.012
07	0.002	0.004	0.004	0.99
08	0.005	0.985	0.008	0.002
09	0.974	0.016	0.003	0.007
10	0.008	0.308	0.039	0.645
11	0.21	0.426	0.171	0.193

PWM

	A	C	G	T
01	-0.066	-0.449	0.46	-0.173
02	0.781	-0.896	0.306	-2.985
03	-3.783	-3.783	-2.653	1.357
04	-4.213	-3.484	1.348	-2.243
05	1.348	-2.773	-3.253	-2.985
06	-3.484	-4.982	1.363	-2.909
07	-4.213	-3.783	-3.783	1.371
08	-3.622	1.366	-3.253	-4.213
09	1.355	-2.653	-3.975	-3.362
10	-3.253	0.207	-1.821	0.944
11	-0.173	0.53	-0.377	-0.257

Standard thresholds

P-value	Threshold
0.001	2.42551
0.0005	3.988345
0.0001	6.514105