JUN.H12INVIVO.0.P.B motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUN.H12INVIVO.0.P.B
Gene (human)	JUN (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jun
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	0
Quality	B

Motif length	12
Consensus	bvvTGAGTCAYb
GC content	48.67%
Information content (bits; total / per base)	14.208 / 1.184
Data sources	ChIP-Seq
Aligned words	664

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	64 (409)	0.843	0.977	0.791	0.946	0.819	0.973	3.454	5.315	166.244	547.301
Mouse	29 (173)	0.873	0.941	0.808	0.911	0.855	0.935	3.31	4.48	170.092	373.699

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.641	0.612	0.596	0.574	0.57	0.554
Non-Methyl HT-SELEX, 1 experiments	best	0.641	0.612	0.596	0.574	0.57	0.554

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	16.006	29.422	0.286	0.28

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.9	0.663	0.891	0.617
batch 2	0.646	0.278	0.431	0.511

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.1
HGNC	HGNC:6204
MGI	MGI:96646
EntrezGene (human)	GeneID:3725 (SSTAR profile)
EntrezGene (mouse)	GeneID:16476 (SSTAR profile)
UniProt ID (human)	JUN_HUMAN
UniProt ID (mouse)	JUN_MOUSE
UniProt AC (human)	P05412 (TFClass)
UniProt AC (mouse)	P05627 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	64 human, 29 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	JUN.H12INVIVO.0.P.B.pcm
PWM	JUN.H12INVIVO.0.P.B.pwm
PFM	JUN.H12INVIVO.0.P.B.pfm
Alignment	JUN.H12INVIVO.0.P.B.words.tsv
Threshold to P-value map	JUN.H12INVIVO.0.P.B.thr
Motif in other formats
JASPAR format	JUN.H12INVIVO.0.P.B_jaspar_format.txt
MEME format	JUN.H12INVIVO.0.P.B_meme_format.meme
Transfac format	JUN.H12INVIVO.0.P.B_transfac_format.txt
Homer format	JUN.H12INVIVO.0.P.B_homer_format_0.001.txt JUN.H12INVIVO.0.P.B_homer_format_0.0005.txt JUN.H12INVIVO.0.P.B_homer_format_0.0001.txt

PCM

	A	C	G	T
01	111.0	132.0	280.0	141.0
02	168.0	131.0	265.0	100.0
03	302.0	105.0	213.0	44.0
04	1.0	1.0	16.0	646.0
05	17.0	0.0	642.0	5.0
06	635.0	20.0	2.0	7.0
07	23.0	0.0	641.0	0.0
08	0.0	0.0	0.0	664.0
09	2.0	662.0	0.0	0.0
10	664.0	0.0	0.0	0.0
11	5.0	266.0	75.0	318.0
12	95.0	307.0	120.0	142.0

PFM

	A	C	G	T
01	0.167	0.199	0.422	0.212
02	0.253	0.197	0.399	0.151
03	0.455	0.158	0.321	0.066
04	0.002	0.002	0.024	0.973
05	0.026	0.0	0.967	0.008
06	0.956	0.03	0.003	0.011
07	0.035	0.0	0.965	0.0
08	0.0	0.0	0.0	1.0
09	0.003	0.997	0.0	0.0
10	1.0	0.0	0.0	0.0
11	0.008	0.401	0.113	0.479
12	0.143	0.462	0.181	0.214

PWM

	A	C	G	T
01	-0.398	-0.227	0.519	-0.162
02	0.012	-0.234	0.464	-0.5
03	0.594	-0.452	0.247	-1.301
04	-4.157	-4.157	-2.252	1.352
05	-2.197	-4.636	1.345	-3.231
06	1.334	-2.048	-3.834	-2.967
07	-1.918	-4.636	1.344	-4.636
08	-4.636	-4.636	-4.636	1.379
09	-3.834	1.376	-4.636	-4.636
10	1.379	-4.636	-4.636	-4.636
11	-3.231	0.468	-0.783	0.645
12	-0.551	0.61	-0.321	-0.155

Standard thresholds

P-value	Threshold
0.001	2.66483
0.0005	4.09083
0.0001	6.559375