JUN.H12INVITRO.1.S.C motif - HOmo sapiens COmprehensive MOdel COllection

Motif	JUN.H12INVITRO.1.S.C
Gene (human)	JUN (GeneCards)
Gene synonyms (human)
Gene (mouse)	Jun
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype	1
Quality	C

Motif length	13
Consensus	vWbRCGTCAYShn
GC content	49.66%
Information content (bits; total / per base)	11.565 / 0.89
Data sources	HT-SELEX
Aligned words	817

ChIP-Seq benchmarking	Num. of experiments (peaksets)	auROC, median	auROC, best	auPRC, median	auPRC, best	pseudo-auROC, median	pseudo-auROC, best	pseudo-log-auROC, median	pseudo-log-auROC, best	Centrality, median	Centrality, best
Human	64 (409)	0.555	0.833	0.404	0.833	0.564	0.892	1.316	5.764	6.523	355.252
Mouse	29 (173)	0.592	0.639	0.448	0.503	0.58	0.642	1.435	1.713	17.959	71.602

HT-SELEX benchmarking		auROC10	auPRC10	auROC25	auPRC25	auROC50	auPRC50
Non-Methyl HT-SELEX, 1 experiments	median	0.695	0.67	0.635	0.612	0.59	0.577
Non-Methyl HT-SELEX, 1 experiments	best	0.695	0.67	0.635	0.612	0.59	0.577

rSNP benchmarking, ADASTRA	odds-ratio	-log-Fisher's P	Pearson r	Kendall tau
#	2.101	3.503	0.062	0.083

rSNP benchmarking, SNP-SELEX	auROC	auPRC	Pearson r	Kendall tau
batch 1	0.686	0.225	0.549	0.334
batch 2	0.864	0.631	0.783	0.511

TF superclass	Basic domains {1} (TFClass)
TF class	Basic leucine zipper factors (bZIP) {1.1} (TFClass)
TF family	Jun-related {1.1.1} (TFClass)
TF subfamily	Jun {1.1.1.1} (TFClass)
TFClass ID	TFClass: 1.1.1.1.1
HGNC	HGNC:6204
MGI	MGI:96646
EntrezGene (human)	GeneID:3725 (SSTAR profile)
EntrezGene (mouse)	GeneID:16476 (SSTAR profile)
UniProt ID (human)	JUN_HUMAN
UniProt ID (mouse)	JUN_MOUSE
UniProt AC (human)	P05412 (TFClass)
UniProt AC (mouse)	P05627 (TFClass)
GRECO-DB-TF	yes

ChIP-Seq	64 human, 29 mouse
HT-SELEX	1
Methyl-HT-SELEX	0

PCM	JUN.H12INVITRO.1.S.C.pcm
PWM	JUN.H12INVITRO.1.S.C.pwm
PFM	JUN.H12INVITRO.1.S.C.pfm
Alignment	JUN.H12INVITRO.1.S.C.words.tsv
Threshold to P-value map	JUN.H12INVITRO.1.S.C.thr
Motif in other formats
JASPAR format	JUN.H12INVITRO.1.S.C_jaspar_format.txt
MEME format	JUN.H12INVITRO.1.S.C_meme_format.meme
Transfac format	JUN.H12INVITRO.1.S.C_transfac_format.txt
Homer format	JUN.H12INVITRO.1.S.C_homer_format_0.001.txt JUN.H12INVITRO.1.S.C_homer_format_0.0005.txt JUN.H12INVITRO.1.S.C_homer_format_0.0001.txt

PCM

	A	C	G	T
01	389.0	188.0	147.0	93.0
02	109.5	55.5	47.5	604.5
03	62.0	74.0	360.0	321.0
04	610.0	53.0	151.0	3.0
05	0.0	817.0	0.0	0.0
06	0.0	206.0	611.0	0.0
07	0.0	0.0	0.0	817.0
08	2.0	535.0	0.0	280.0
09	698.0	108.0	9.0	2.0
10	21.0	361.0	17.0	418.0
11	8.0	585.0	139.0	85.0
12	168.5	311.5	120.5	216.5
13	168.75	264.75	113.75	269.75

PFM

	A	C	G	T
01	0.476	0.23	0.18	0.114
02	0.134	0.068	0.058	0.74
03	0.076	0.091	0.441	0.393
04	0.747	0.065	0.185	0.004
05	0.0	1.0	0.0	0.0
06	0.0	0.252	0.748	0.0
07	0.0	0.0	0.0	1.0
08	0.002	0.655	0.0	0.343
09	0.854	0.132	0.011	0.002
10	0.026	0.442	0.021	0.512
11	0.01	0.716	0.17	0.104
12	0.206	0.381	0.147	0.265
13	0.207	0.324	0.139	0.33

PWM

	A	C	G	T
01	0.64	-0.082	-0.326	-0.777
02	-0.616	-1.281	-1.432	1.08
03	-1.174	-1.001	0.563	0.449
04	1.089	-1.326	-0.299	-3.785
05	-4.811	1.38	-4.811	-4.811
06	-4.811	0.008	1.09	-4.811
07	-4.811	-4.811	-4.811	1.38
08	-4.026	0.958	-4.811	0.313
09	1.223	-0.63	-2.959	-4.026
10	-2.206	0.566	-2.4	0.712
11	-3.058	1.047	-0.381	-0.865
12	-0.191	0.419	-0.522	0.058
13	-0.189	0.258	-0.579	0.276

Standard thresholds

P-value	Threshold
0.001	4.34316
0.0005	5.43496
0.0001	7.444125