Motif | JUN.H12INVITRO.0.P.B |
Gene (human) | JUN (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Jun |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | JUN.H12INVITRO.0.P.B |
Gene (human) | JUN (GeneCards) |
Gene synonyms (human) | |
Gene (mouse) | Jun |
Gene synonyms (mouse) | |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | bvvTGAGTCAYb |
GC content | 49.79% |
Information content (bits; total / per base) | 14.6 / 1.217 |
Data sources | ChIP-Seq |
Aligned words | 593 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 64 (409) | 0.846 | 0.979 | 0.79 | 0.948 | 0.814 | 0.972 | 3.415 | 5.224 | 165.276 | 542.921 |
Mouse | 29 (173) | 0.869 | 0.942 | 0.802 | 0.91 | 0.851 | 0.933 | 3.277 | 4.468 | 172.076 | 367.959 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Non-Methyl HT-SELEX, 1 experiments | median | 0.657 | 0.623 | 0.604 | 0.581 | 0.575 | 0.559 |
best | 0.657 | 0.623 | 0.604 | 0.581 | 0.575 | 0.559 |
rSNP benchmarking, ADASTRA | odds-ratio | -log-Fisher's P | Pearson r | Kendall tau |
---|---|---|---|---|
# | 17.51 | 30.211 | 0.285 | 0.277 |
rSNP benchmarking, SNP-SELEX | auROC | auPRC | Pearson r | Kendall tau |
---|---|---|---|---|
batch 1 | 0.895 | 0.676 | 0.892 | 0.619 |
batch 2 | 0.634 | 0.268 | 0.412 | 0.511 |
TF superclass | Basic domains {1} (TFClass) |
TF class | Basic leucine zipper factors (bZIP) {1.1} (TFClass) |
TF family | Jun-related {1.1.1} (TFClass) |
TF subfamily | Jun {1.1.1.1} (TFClass) |
TFClass ID | TFClass: 1.1.1.1.1 |
HGNC | HGNC:6204 |
MGI | MGI:96646 |
EntrezGene (human) | GeneID:3725 (SSTAR profile) |
EntrezGene (mouse) | GeneID:16476 (SSTAR profile) |
UniProt ID (human) | JUN_HUMAN |
UniProt ID (mouse) | JUN_MOUSE |
UniProt AC (human) | P05412 (TFClass) |
UniProt AC (mouse) | P05627 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 64 human, 29 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 0 |
PCM | JUN.H12INVITRO.0.P.B.pcm |
PWM | JUN.H12INVITRO.0.P.B.pwm |
PFM | JUN.H12INVITRO.0.P.B.pfm |
Alignment | JUN.H12INVITRO.0.P.B.words.tsv |
Threshold to P-value map | JUN.H12INVITRO.0.P.B.thr |
Motif in other formats | |
JASPAR format | JUN.H12INVITRO.0.P.B_jaspar_format.txt |
MEME format | JUN.H12INVITRO.0.P.B_meme_format.meme |
Transfac format | JUN.H12INVITRO.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 102.0 | 123.0 | 258.0 | 110.0 |
02 | 159.0 | 101.0 | 252.0 | 81.0 |
03 | 243.0 | 102.0 | 207.0 | 41.0 |
04 | 0.0 | 0.0 | 8.0 | 585.0 |
05 | 12.0 | 0.0 | 580.0 | 1.0 |
06 | 559.0 | 25.0 | 0.0 | 9.0 |
07 | 13.0 | 0.0 | 580.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 593.0 |
09 | 2.0 | 591.0 | 0.0 | 0.0 |
10 | 593.0 | 0.0 | 0.0 | 0.0 |
11 | 4.0 | 236.0 | 51.0 | 302.0 |
12 | 60.0 | 319.0 | 110.0 | 104.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.172 | 0.207 | 0.435 | 0.185 |
02 | 0.268 | 0.17 | 0.425 | 0.137 |
03 | 0.41 | 0.172 | 0.349 | 0.069 |
04 | 0.0 | 0.0 | 0.013 | 0.987 |
05 | 0.02 | 0.0 | 0.978 | 0.002 |
06 | 0.943 | 0.042 | 0.0 | 0.015 |
07 | 0.022 | 0.0 | 0.978 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.003 | 0.997 | 0.0 | 0.0 |
10 | 1.0 | 0.0 | 0.0 | 0.0 |
11 | 0.007 | 0.398 | 0.086 | 0.509 |
12 | 0.101 | 0.538 | 0.185 | 0.175 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.369 | -0.185 | 0.55 | -0.295 |
02 | 0.069 | -0.379 | 0.526 | -0.596 |
03 | 0.49 | -0.369 | 0.331 | -1.258 |
04 | -4.542 | -4.542 | -2.748 | 1.365 |
05 | -2.4 | -4.542 | 1.356 | -4.056 |
06 | 1.319 | -1.729 | -4.542 | -2.649 |
07 | -2.329 | -4.542 | 1.356 | -4.542 |
08 | -4.542 | -4.542 | -4.542 | 1.378 |
09 | -3.73 | 1.375 | -4.542 | -4.542 |
10 | 1.378 | -4.542 | -4.542 | -4.542 |
11 | -3.288 | 0.461 | -1.047 | 0.706 |
12 | -0.889 | 0.761 | -0.295 | -0.35 |
P-value | Threshold |
---|---|
0.001 | 2.414885 |
0.0005 | 3.87243 |
0.0001 | 6.43011 |