| Motif | IRX1.H12INVIVO.0.S.D |
| Gene (human) | IRX1 (GeneCards) |
| Gene synonyms (human) | IRXA1 |
| Gene (mouse) | Irx1 |
| Gene synonyms (mouse) | Irxa1 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | IRX1.H12INVIVO.0.S.D |
| Gene (human) | IRX1 (GeneCards) |
| Gene synonyms (human) | IRXA1 |
| Gene (mouse) | Irx1 |
| Gene synonyms (mouse) | Irxa1 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | nCATGTWvn |
| GC content | 39.18% |
| Information content (bits; total / per base) | 9.216 / 1.024 |
| Data sources | HT-SELEX |
| Aligned words | 7594 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 1 experiments | median | 0.893 | 0.842 | 0.845 | 0.792 | 0.789 | 0.741 |
| best | 0.893 | 0.842 | 0.845 | 0.792 | 0.789 | 0.741 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | TALE-type HD {3.1.4} (TFClass) |
| TF subfamily | IRX {3.1.4.1} (TFClass) |
| TFClass ID | TFClass: 3.1.4.1.1 |
| HGNC | HGNC:14358 |
| MGI | MGI:1197515 |
| EntrezGene (human) | GeneID:79192 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:16371 (SSTAR profile) |
| UniProt ID (human) | IRX1_HUMAN |
| UniProt ID (mouse) | IRX1_MOUSE |
| UniProt AC (human) | P78414 (TFClass) |
| UniProt AC (mouse) | P81068 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 0 |
| PCM | IRX1.H12INVIVO.0.S.D.pcm |
| PWM | IRX1.H12INVIVO.0.S.D.pwm |
| PFM | IRX1.H12INVIVO.0.S.D.pfm |
| Alignment | IRX1.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | IRX1.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | IRX1.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | IRX1.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | IRX1.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2298.75 | 1610.75 | 2059.75 | 1624.75 |
| 02 | 115.75 | 6169.75 | 1103.75 | 204.75 |
| 03 | 5725.0 | 0.0 | 81.0 | 1788.0 |
| 04 | 0.0 | 0.0 | 0.0 | 7594.0 |
| 05 | 0.0 | 0.0 | 7594.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 7594.0 |
| 07 | 4319.0 | 494.0 | 1.0 | 2780.0 |
| 08 | 2843.0 | 2751.0 | 1363.0 | 637.0 |
| 09 | 1930.5 | 1919.5 | 1632.5 | 2111.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.303 | 0.212 | 0.271 | 0.214 |
| 02 | 0.015 | 0.812 | 0.145 | 0.027 |
| 03 | 0.754 | 0.0 | 0.011 | 0.235 |
| 04 | 0.0 | 0.0 | 0.0 | 1.0 |
| 05 | 0.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 0.0 | 0.0 | 1.0 |
| 07 | 0.569 | 0.065 | 0.0 | 0.366 |
| 08 | 0.374 | 0.362 | 0.179 | 0.084 |
| 09 | 0.254 | 0.253 | 0.215 | 0.278 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.191 | -0.164 | 0.081 | -0.156 |
| 02 | -2.779 | 1.178 | -0.542 | -2.217 |
| 03 | 1.103 | -6.746 | -3.128 | -0.06 |
| 04 | -6.746 | -6.746 | -6.746 | 1.385 |
| 05 | -6.746 | -6.746 | 1.385 | -6.746 |
| 06 | -6.746 | -6.746 | -6.746 | 1.385 |
| 07 | 0.821 | -1.343 | -6.376 | 0.381 |
| 08 | 0.403 | 0.371 | -0.331 | -1.09 |
| 09 | 0.017 | 0.011 | -0.151 | 0.106 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.52635 |
| 0.0005 | 6.255185 |
| 0.0001 | 7.485885 |