MotifIRF1.H12INVIVO.0.P.B
Gene (human)IRF1
(GeneCards)
Gene synonyms (human)
Gene (mouse)Irf1
Gene synonyms (mouse)
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length19
ConsensushWnnGAAASYGAAAShvvn
GC content39.08%
Information content (bits; total / per base)17.398 / 0.916
Data sourcesChIP-Seq
Aligned words681

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 8 (46) 0.906 0.987 0.902 0.976 0.92 0.991 6.492 7.652 391.162 693.796
Mouse 15 (97) 0.967 0.994 0.949 0.988 0.981 0.997 6.735 7.581 460.357 747.745
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classTryptophan cluster factors {3.5} (TFClass)
TF familyIRF {3.5.3} (TFClass)
TF subfamily {3.5.3.0} (TFClass)
TFClass IDTFClass: 3.5.3.0.1
HGNCHGNC:6116
MGIMGI:96590
EntrezGene (human)GeneID:3659
(SSTAR profile)
EntrezGene (mouse)GeneID:16362
(SSTAR profile)
UniProt ID (human)IRF1_HUMAN
UniProt ID (mouse)IRF1_MOUSE
UniProt AC (human)P10914
(TFClass)
UniProt AC (mouse)P15314
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 8 human, 15 mouse
HT-SELEX 0
Methyl-HT-SELEX 0
PCM
ACGT
01395.0107.088.091.0
02439.064.075.0103.0
03166.0180.0217.0118.0
04171.0130.0121.0259.0
0577.011.0589.04.0
06655.05.019.02.0
07665.04.09.03.0
08659.06.06.010.0
0927.0267.0379.08.0
1095.0120.015.0451.0
1116.05.0657.03.0
12648.03.027.03.0
13647.08.011.015.0
14658.05.017.01.0
1514.0259.0402.06.0
1688.0251.039.0303.0
17276.0107.0231.067.0
18307.0105.0204.065.0
19242.0139.0174.0126.0
PFM
ACGT
010.580.1570.1290.134
020.6450.0940.110.151
030.2440.2640.3190.173
040.2510.1910.1780.38
050.1130.0160.8650.006
060.9620.0070.0280.003
070.9770.0060.0130.004
080.9680.0090.0090.015
090.040.3920.5570.012
100.140.1760.0220.662
110.0230.0070.9650.004
120.9520.0040.040.004
130.950.0120.0160.022
140.9660.0070.0250.001
150.0210.380.590.009
160.1290.3690.0570.445
170.4050.1570.3390.098
180.4510.1540.30.095
190.3550.2040.2560.185
PWM
ACGT
010.836-0.459-0.651-0.618
020.941-0.963-0.808-0.496
03-0.0250.0550.241-0.362
040.004-0.267-0.3380.416
05-0.782-2.6111.234-3.419
061.34-3.255-2.12-3.857
071.355-3.419-2.783-3.614
081.346-3.115-3.115-2.693
09-1.7920.4470.795-2.882
10-0.576-0.346-2.3360.968
11-2.277-3.2551.343-3.614
121.33-3.614-1.792-3.614
131.328-2.882-2.611-2.336
141.345-3.255-2.222-4.179
15-2.3980.4160.854-3.115
16-0.6510.385-1.4420.572
170.479-0.4590.303-0.918
180.585-0.4770.179-0.948
190.349-0.2010.022-0.298
Standard thresholds
P-value Threshold
0.001 1.76756
0.0005 3.06576
0.0001 5.79511