| Motif | HXD9.H12RSNP.0.SM.D |
| Gene (human) | HOXD9 (GeneCards) |
| Gene synonyms (human) | HOX4C |
| Gene (mouse) | Hoxd9 |
| Gene synonyms (mouse) | Hox-4.4, Hoxd-9 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXD9.H12RSNP.0.SM.D |
| Gene (human) | HOXD9 (GeneCards) |
| Gene synonyms (human) | HOX4C |
| Gene (mouse) | Hoxd9 |
| Gene synonyms (mouse) | Hox-4.4, Hoxd-9 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 13 |
| Consensus | nnWTTTACGAYbn |
| GC content | 38.79% |
| Information content (bits; total / per base) | 14.105 / 1.085 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 2002 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.992 | 0.986 | 0.979 | 0.969 | 0.954 | 0.938 |
| best | 0.995 | 0.993 | 0.988 | 0.982 | 0.963 | 0.952 | |
| Methyl HT-SELEX, 2 experiments | median | 0.992 | 0.986 | 0.979 | 0.97 | 0.943 | 0.929 |
| best | 0.995 | 0.991 | 0.988 | 0.982 | 0.963 | 0.952 | |
| Non-Methyl HT-SELEX, 2 experiments | median | 0.991 | 0.986 | 0.979 | 0.969 | 0.954 | 0.938 |
| best | 0.995 | 0.993 | 0.986 | 0.98 | 0.962 | 0.95 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.4 |
| HGNC | HGNC:5140 |
| MGI | MGI:96210 |
| EntrezGene (human) | GeneID:3235 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15438 (SSTAR profile) |
| UniProt ID (human) | HXD9_HUMAN |
| UniProt ID (mouse) | HXD9_MOUSE |
| UniProt AC (human) | P28356 (TFClass) |
| UniProt AC (mouse) | P28357 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 2 |
| PCM | HXD9.H12RSNP.0.SM.D.pcm |
| PWM | HXD9.H12RSNP.0.SM.D.pwm |
| PFM | HXD9.H12RSNP.0.SM.D.pfm |
| Alignment | HXD9.H12RSNP.0.SM.D.words.tsv |
| Threshold to P-value map | HXD9.H12RSNP.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXD9.H12RSNP.0.SM.D_jaspar_format.txt |
| MEME format | HXD9.H12RSNP.0.SM.D_meme_format.meme |
| Transfac format | HXD9.H12RSNP.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 615.75 | 601.75 | 403.75 | 380.75 |
| 02 | 513.0 | 457.0 | 663.0 | 369.0 |
| 03 | 278.0 | 163.0 | 218.0 | 1343.0 |
| 04 | 19.0 | 1.0 | 3.0 | 1979.0 |
| 05 | 0.0 | 0.0 | 0.0 | 2002.0 |
| 06 | 272.0 | 0.0 | 0.0 | 1730.0 |
| 07 | 2002.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 1504.0 | 0.0 | 498.0 |
| 09 | 0.0 | 0.0 | 1981.0 | 21.0 |
| 10 | 1903.0 | 0.0 | 98.0 | 1.0 |
| 11 | 0.0 | 1507.0 | 216.0 | 279.0 |
| 12 | 229.75 | 1140.75 | 294.75 | 336.75 |
| 13 | 490.75 | 449.75 | 394.75 | 666.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.308 | 0.301 | 0.202 | 0.19 |
| 02 | 0.256 | 0.228 | 0.331 | 0.184 |
| 03 | 0.139 | 0.081 | 0.109 | 0.671 |
| 04 | 0.009 | 0.0 | 0.001 | 0.989 |
| 05 | 0.0 | 0.0 | 0.0 | 1.0 |
| 06 | 0.136 | 0.0 | 0.0 | 0.864 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.751 | 0.0 | 0.249 |
| 09 | 0.0 | 0.0 | 0.99 | 0.01 |
| 10 | 0.951 | 0.0 | 0.049 | 0.0 |
| 11 | 0.0 | 0.753 | 0.108 | 0.139 |
| 12 | 0.115 | 0.57 | 0.147 | 0.168 |
| 13 | 0.245 | 0.225 | 0.197 | 0.333 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.207 | 0.184 | -0.214 | -0.272 |
| 02 | 0.025 | -0.091 | 0.28 | -0.303 |
| 03 | -0.585 | -1.114 | -0.826 | 0.985 |
| 04 | -3.18 | -5.155 | -4.63 | 1.372 |
| 05 | -5.577 | -5.577 | -5.577 | 1.383 |
| 06 | -0.607 | -5.577 | -5.577 | 1.238 |
| 07 | 1.383 | -5.577 | -5.577 | -5.577 |
| 08 | -5.577 | 1.098 | -5.577 | -0.005 |
| 09 | -5.577 | -5.577 | 1.373 | -3.088 |
| 10 | 1.333 | -5.577 | -1.615 | -5.155 |
| 11 | -5.577 | 1.1 | -0.835 | -0.581 |
| 12 | -0.774 | 0.822 | -0.527 | -0.394 |
| 13 | -0.02 | -0.106 | -0.236 | 0.286 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.10401 |
| 0.0005 | 3.50796 |
| 0.0001 | 6.96879 |