MotifHXD9.H12INVIVO.0.SM.D
Gene (human)HOXD9
(GeneCards)
Gene synonyms (human)HOX4C
Gene (mouse)Hoxd9
Gene synonyms (mouse)Hox-4.4, Hoxd-9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnnWTTTACGAYbn
GC content38.79%
Information content (bits; total / per base)14.105 / 1.085
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2002

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.992 0.986 0.979 0.969 0.954 0.938
best 0.995 0.993 0.988 0.982 0.963 0.952
Methyl HT-SELEX, 2 experiments median 0.992 0.986 0.979 0.97 0.943 0.929
best 0.995 0.991 0.988 0.982 0.963 0.952
Non-Methyl HT-SELEX, 2 experiments median 0.991 0.986 0.979 0.969 0.954 0.938
best 0.995 0.993 0.986 0.98 0.962 0.95
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.4
HGNCHGNC:5140
MGIMGI:96210
EntrezGene (human)GeneID:3235
(SSTAR profile)
EntrezGene (mouse)GeneID:15438
(SSTAR profile)
UniProt ID (human)HXD9_HUMAN
UniProt ID (mouse)HXD9_MOUSE
UniProt AC (human)P28356
(TFClass)
UniProt AC (mouse)P28357
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 2
PCM
ACGT
01615.75601.75403.75380.75
02513.0457.0663.0369.0
03278.0163.0218.01343.0
0419.01.03.01979.0
050.00.00.02002.0
06272.00.00.01730.0
072002.00.00.00.0
080.01504.00.0498.0
090.00.01981.021.0
101903.00.098.01.0
110.01507.0216.0279.0
12229.751140.75294.75336.75
13490.75449.75394.75666.75
PFM
ACGT
010.3080.3010.2020.19
020.2560.2280.3310.184
030.1390.0810.1090.671
040.0090.00.0010.989
050.00.00.01.0
060.1360.00.00.864
071.00.00.00.0
080.00.7510.00.249
090.00.00.990.01
100.9510.00.0490.0
110.00.7530.1080.139
120.1150.570.1470.168
130.2450.2250.1970.333
PWM
ACGT
010.2070.184-0.214-0.272
020.025-0.0910.28-0.303
03-0.585-1.114-0.8260.985
04-3.18-5.155-4.631.372
05-5.577-5.577-5.5771.383
06-0.607-5.577-5.5771.238
071.383-5.577-5.577-5.577
08-5.5771.098-5.577-0.005
09-5.577-5.5771.373-3.088
101.333-5.577-1.615-5.155
11-5.5771.1-0.835-0.581
12-0.7740.822-0.527-0.394
13-0.02-0.106-0.2360.286
Standard thresholds
P-value Threshold
0.001 2.10401
0.0005 3.50796
0.0001 6.96879