Motif | HXD4.H12CORE.0.SM.B |
Gene (human) | HOXD4 (GeneCards) |
Gene synonyms (human) | HOX4B |
Gene (mouse) | Hoxd4 |
Gene synonyms (mouse) | Hox-4.2, Hoxd-4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXD4.H12CORE.0.SM.B |
Gene (human) | HOXD4 (GeneCards) |
Gene synonyms (human) | HOX4B |
Gene (mouse) | Hoxd4 |
Gene synonyms (mouse) | Hox-4.2, Hoxd-4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | nnvbTAATKRbn |
GC content | 37.97% |
Information content (bits; total / per base) | 10.367 / 0.864 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9383 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.95 | 0.919 | 0.928 | 0.89 | 0.852 | 0.828 |
best | 0.97 | 0.952 | 0.938 | 0.913 | 0.881 | 0.845 | |
Methyl HT-SELEX, 2 experiments | median | 0.888 | 0.85 | 0.813 | 0.785 | 0.739 | 0.724 |
best | 0.947 | 0.913 | 0.926 | 0.886 | 0.872 | 0.835 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.961 | 0.938 | 0.934 | 0.904 | 0.856 | 0.833 |
best | 0.97 | 0.952 | 0.938 | 0.913 | 0.881 | 0.845 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX4 {3.1.1.4} (TFClass) |
TFClass ID | TFClass: 3.1.1.4.4 |
HGNC | HGNC:5138 |
MGI | MGI:96208 |
EntrezGene (human) | GeneID:3233 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15436 (SSTAR profile) |
UniProt ID (human) | HXD4_HUMAN |
UniProt ID (mouse) | HXD4_MOUSE |
UniProt AC (human) | P09016 (TFClass) |
UniProt AC (mouse) | P10628 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | HXD4.H12CORE.0.SM.B.pcm |
PWM | HXD4.H12CORE.0.SM.B.pwm |
PFM | HXD4.H12CORE.0.SM.B.pfm |
Alignment | HXD4.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXD4.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXD4.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXD4.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXD4.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2389.25 | 2151.25 | 2473.25 | 2369.25 |
02 | 1930.0 | 3726.0 | 2014.0 | 1713.0 |
03 | 2177.0 | 2471.0 | 4298.0 | 437.0 |
04 | 371.0 | 3692.0 | 1061.0 | 4259.0 |
05 | 2.0 | 4.0 | 1.0 | 9376.0 |
06 | 9383.0 | 0.0 | 0.0 | 0.0 |
07 | 9383.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 870.0 | 0.0 | 8513.0 |
09 | 3.0 | 136.0 | 6304.0 | 2940.0 |
10 | 6632.0 | 171.0 | 2353.0 | 227.0 |
11 | 1086.0 | 3433.0 | 1997.0 | 2867.0 |
12 | 1773.5 | 2747.5 | 2854.5 | 2007.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.255 | 0.229 | 0.264 | 0.253 |
02 | 0.206 | 0.397 | 0.215 | 0.183 |
03 | 0.232 | 0.263 | 0.458 | 0.047 |
04 | 0.04 | 0.393 | 0.113 | 0.454 |
05 | 0.0 | 0.0 | 0.0 | 0.999 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.093 | 0.0 | 0.907 |
09 | 0.0 | 0.014 | 0.672 | 0.313 |
10 | 0.707 | 0.018 | 0.251 | 0.024 |
11 | 0.116 | 0.366 | 0.213 | 0.306 |
12 | 0.189 | 0.293 | 0.304 | 0.214 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.018 | -0.086 | 0.053 | 0.01 |
02 | -0.195 | 0.462 | -0.152 | -0.314 |
03 | -0.075 | 0.052 | 0.605 | -1.676 |
04 | -1.839 | 0.453 | -0.792 | 0.596 |
05 | -6.306 | -5.923 | -6.571 | 1.385 |
06 | 1.386 | -6.934 | -6.934 | -6.934 |
07 | 1.386 | -6.934 | -6.934 | -6.934 |
08 | -6.934 | -0.99 | -6.934 | 1.288 |
09 | -6.096 | -2.832 | 0.988 | 0.226 |
10 | 1.039 | -2.606 | 0.003 | -2.326 |
11 | -0.769 | 0.381 | -0.161 | 0.2 |
12 | -0.279 | 0.158 | 0.196 | -0.156 |
P-value | Threshold |
---|---|
0.001 | 4.82506 |
0.0005 | 5.96312 |
0.0001 | 7.739225 |