Motif | HXD3.H12CORE.0.SM.B |
Gene (human) | HOXD3 (GeneCards) |
Gene synonyms (human) | HOX1D, HOX4A |
Gene (mouse) | Hoxd3 |
Gene synonyms (mouse) | Hox-4.1, Hoxd-3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXD3.H12CORE.0.SM.B |
Gene (human) | HOXD3 (GeneCards) |
Gene synonyms (human) | HOX1D, HOX4A |
Gene (mouse) | Hoxd3 |
Gene synonyms (mouse) | Hox-4.1, Hoxd-3 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nbvCTAATTASvn |
GC content | 40.58% |
Information content (bits; total / per base) | 13.597 / 1.046 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8662 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.949 | 0.928 | 0.886 | 0.872 | 0.813 | 0.814 |
best | 0.997 | 0.996 | 0.994 | 0.991 | 0.984 | 0.978 | |
Methyl HT-SELEX, 1 experiments | median | 0.997 | 0.996 | 0.994 | 0.991 | 0.984 | 0.978 |
best | 0.997 | 0.996 | 0.994 | 0.991 | 0.984 | 0.978 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.902 | 0.864 | 0.781 | 0.759 | 0.65 | 0.662 |
best | 0.995 | 0.993 | 0.99 | 0.985 | 0.976 | 0.967 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX3 {3.1.1.3} (TFClass) |
TFClass ID | TFClass: 3.1.1.3.3 |
HGNC | HGNC:5137 |
MGI | MGI:96207 |
EntrezGene (human) | GeneID:3232 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15434 (SSTAR profile) |
UniProt ID (human) | HXD3_HUMAN |
UniProt ID (mouse) | HXD3_MOUSE |
UniProt AC (human) | P31249 (TFClass) |
UniProt AC (mouse) | P09027 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | HXD3.H12CORE.0.SM.B.pcm |
PWM | HXD3.H12CORE.0.SM.B.pwm |
PFM | HXD3.H12CORE.0.SM.B.pfm |
Alignment | HXD3.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXD3.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXD3.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXD3.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXD3.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2135.0 | 2016.0 | 2481.0 | 2030.0 |
02 | 965.5 | 4866.5 | 1322.5 | 1507.5 |
03 | 2241.0 | 1943.0 | 4313.0 | 165.0 |
04 | 43.0 | 6967.0 | 147.0 | 1505.0 |
05 | 0.0 | 0.0 | 0.0 | 8662.0 |
06 | 8662.0 | 0.0 | 0.0 | 0.0 |
07 | 8662.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 18.0 | 0.0 | 8644.0 |
09 | 0.0 | 6.0 | 1951.0 | 6705.0 |
10 | 7937.0 | 4.0 | 709.0 | 12.0 |
11 | 317.0 | 5432.0 | 2369.0 | 544.0 |
12 | 1222.5 | 4176.5 | 2106.5 | 1156.5 |
13 | 1539.75 | 3257.75 | 1604.75 | 2259.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.246 | 0.233 | 0.286 | 0.234 |
02 | 0.111 | 0.562 | 0.153 | 0.174 |
03 | 0.259 | 0.224 | 0.498 | 0.019 |
04 | 0.005 | 0.804 | 0.017 | 0.174 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.002 | 0.0 | 0.998 |
09 | 0.0 | 0.001 | 0.225 | 0.774 |
10 | 0.916 | 0.0 | 0.082 | 0.001 |
11 | 0.037 | 0.627 | 0.273 | 0.063 |
12 | 0.141 | 0.482 | 0.243 | 0.134 |
13 | 0.178 | 0.376 | 0.185 | 0.261 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.014 | -0.071 | 0.136 | -0.065 |
02 | -0.806 | 0.809 | -0.492 | -0.362 |
03 | 0.034 | -0.108 | 0.688 | -2.562 |
04 | -3.869 | 1.168 | -2.676 | -0.363 |
05 | -6.863 | -6.863 | -6.863 | 1.386 |
06 | 1.386 | -6.863 | -6.863 | -6.863 |
07 | 1.386 | -6.863 | -6.863 | -6.863 |
08 | -6.863 | -4.672 | -6.863 | 1.383 |
09 | -6.863 | -5.569 | -0.104 | 1.129 |
10 | 1.298 | -5.846 | -1.114 | -5.024 |
11 | -1.915 | 0.919 | 0.09 | -1.378 |
12 | -0.571 | 0.656 | -0.028 | -0.626 |
13 | -0.341 | 0.408 | -0.299 | 0.043 |
P-value | Threshold |
---|---|
0.001 | 1.609715 |
0.0005 | 3.47836 |
0.0001 | 7.194335 |