Motif | HXD12.H12CORE.0.SM.B |
Gene (human) | HOXD12 (GeneCards) |
Gene synonyms (human) | HOX4H |
Gene (mouse) | Hoxd12 |
Gene synonyms (mouse) | Hox-4.7, Hoxd-12 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXD12.H12CORE.0.SM.B |
Gene (human) | HOXD12 (GeneCards) |
Gene synonyms (human) | HOX4H |
Gene (mouse) | Hoxd12 |
Gene synonyms (mouse) | Hox-4.7, Hoxd-12 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 11 |
Consensus | nWTTACGAYbn |
GC content | 38.62% |
Information content (bits; total / per base) | 10.246 / 0.931 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7191 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.95 | 0.929 | 0.851 | 0.829 | 0.731 | 0.728 |
best | 0.975 | 0.959 | 0.945 | 0.923 | 0.881 | 0.856 | |
Methyl HT-SELEX, 1 experiments | median | 0.975 | 0.959 | 0.945 | 0.923 | 0.881 | 0.856 |
best | 0.975 | 0.959 | 0.945 | 0.923 | 0.881 | 0.856 | |
Non-Methyl HT-SELEX, 4 experiments | median | 0.91 | 0.881 | 0.807 | 0.782 | 0.7 | 0.693 |
best | 0.965 | 0.943 | 0.93 | 0.902 | 0.858 | 0.831 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.13 |
HGNC | HGNC:5135 |
MGI | MGI:96204 |
EntrezGene (human) | GeneID:3238 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15432 (SSTAR profile) |
UniProt ID (human) | HXD12_HUMAN |
UniProt ID (mouse) | HXD12_MOUSE |
UniProt AC (human) | P35452 (TFClass) |
UniProt AC (mouse) | P23812 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 4 |
Methyl-HT-SELEX | 1 |
PCM | HXD12.H12CORE.0.SM.B.pcm |
PWM | HXD12.H12CORE.0.SM.B.pwm |
PFM | HXD12.H12CORE.0.SM.B.pfm |
Alignment | HXD12.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXD12.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXD12.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXD12.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXD12.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2018.25 | 1437.25 | 1781.25 | 1954.25 |
02 | 967.5 | 257.5 | 629.5 | 5336.5 |
03 | 218.0 | 110.0 | 51.0 | 6812.0 |
04 | 2513.0 | 6.0 | 28.0 | 4644.0 |
05 | 7191.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 5613.0 | 0.0 | 1578.0 |
07 | 7.0 | 103.0 | 6387.0 | 694.0 |
08 | 6665.0 | 103.0 | 359.0 | 64.0 |
09 | 75.0 | 3505.0 | 1654.0 | 1957.0 |
10 | 879.25 | 2850.25 | 2222.25 | 1239.25 |
11 | 1761.5 | 1690.5 | 1764.5 | 1974.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.281 | 0.2 | 0.248 | 0.272 |
02 | 0.135 | 0.036 | 0.088 | 0.742 |
03 | 0.03 | 0.015 | 0.007 | 0.947 |
04 | 0.349 | 0.001 | 0.004 | 0.646 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.781 | 0.0 | 0.219 |
07 | 0.001 | 0.014 | 0.888 | 0.097 |
08 | 0.927 | 0.014 | 0.05 | 0.009 |
09 | 0.01 | 0.487 | 0.23 | 0.272 |
10 | 0.122 | 0.396 | 0.309 | 0.172 |
11 | 0.245 | 0.235 | 0.245 | 0.275 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.116 | -0.223 | -0.009 | 0.083 |
02 | -0.619 | -1.936 | -1.047 | 1.087 |
03 | -2.101 | -2.775 | -3.521 | 1.331 |
04 | 0.335 | -5.389 | -4.087 | 0.948 |
05 | 1.385 | -6.698 | -6.698 | -6.698 |
06 | -6.698 | 1.138 | -6.698 | -0.13 |
07 | -5.274 | -2.839 | 1.267 | -0.95 |
08 | 1.309 | -2.839 | -1.606 | -3.303 |
09 | -3.149 | 0.667 | -0.083 | 0.085 |
10 | -0.714 | 0.46 | 0.212 | -0.371 |
11 | -0.02 | -0.061 | -0.019 | 0.094 |
P-value | Threshold |
---|---|
0.001 | 4.71237 |
0.0005 | 5.715255 |
0.0001 | 7.598885 |