Motif | HXD10.H12CORE.0.SM.B |
Gene (human) | HOXD10 (GeneCards) |
Gene synonyms (human) | HOX4D, HOX4E |
Gene (mouse) | Hoxd10 |
Gene synonyms (mouse) | Hox-4.5, Hoxd-10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXD10.H12CORE.0.SM.B |
Gene (human) | HOXD10 (GeneCards) |
Gene synonyms (human) | HOX4D, HOX4E |
Gene (mouse) | Hoxd10 |
Gene synonyms (mouse) | Hox-4.5, Hoxd-10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | ndTTTACGAYbn |
GC content | 38.13% |
Information content (bits; total / per base) | 11.386 / 0.949 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8067 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.909 | 0.893 | 0.838 | 0.827 | 0.775 | 0.77 |
best | 0.997 | 0.994 | 0.989 | 0.984 | 0.946 | 0.936 | |
Methyl HT-SELEX, 2 experiments | median | 0.851 | 0.848 | 0.8 | 0.799 | 0.755 | 0.753 |
best | 0.997 | 0.994 | 0.989 | 0.984 | 0.946 | 0.936 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.909 | 0.893 | 0.838 | 0.827 | 0.775 | 0.77 |
best | 0.986 | 0.975 | 0.975 | 0.962 | 0.938 | 0.919 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.8 |
HGNC | HGNC:5133 |
MGI | MGI:96202 |
EntrezGene (human) | GeneID:3236 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15430 (SSTAR profile) |
UniProt ID (human) | HXD10_HUMAN |
UniProt ID (mouse) | HXD10_MOUSE |
UniProt AC (human) | P28358 (TFClass) |
UniProt AC (mouse) | P28359 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | HXD10.H12CORE.0.SM.B.pcm |
PWM | HXD10.H12CORE.0.SM.B.pwm |
PFM | HXD10.H12CORE.0.SM.B.pfm |
Alignment | HXD10.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXD10.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXD10.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXD10.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXD10.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1848.25 | 2434.25 | 2294.25 | 1490.25 |
02 | 1910.5 | 1078.5 | 1770.5 | 3307.5 |
03 | 322.0 | 82.0 | 326.0 | 7337.0 |
04 | 19.0 | 5.0 | 4.0 | 8039.0 |
05 | 2599.0 | 3.0 | 2.0 | 5463.0 |
06 | 8067.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 5247.0 | 2.0 | 2817.0 |
08 | 1.0 | 15.0 | 7437.0 | 614.0 |
09 | 7064.0 | 70.0 | 831.0 | 102.0 |
10 | 81.0 | 4571.0 | 1167.0 | 2248.0 |
11 | 1145.25 | 3795.25 | 1954.25 | 1172.25 |
12 | 1725.5 | 2049.5 | 1772.5 | 2519.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.229 | 0.302 | 0.284 | 0.185 |
02 | 0.237 | 0.134 | 0.219 | 0.41 |
03 | 0.04 | 0.01 | 0.04 | 0.91 |
04 | 0.002 | 0.001 | 0.0 | 0.997 |
05 | 0.322 | 0.0 | 0.0 | 0.677 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.65 | 0.0 | 0.349 |
08 | 0.0 | 0.002 | 0.922 | 0.076 |
09 | 0.876 | 0.009 | 0.103 | 0.013 |
10 | 0.01 | 0.567 | 0.145 | 0.279 |
11 | 0.142 | 0.47 | 0.242 | 0.145 |
12 | 0.214 | 0.254 | 0.22 | 0.312 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.087 | 0.188 | 0.129 | -0.302 |
02 | -0.054 | -0.625 | -0.13 | 0.494 |
03 | -1.829 | -3.177 | -1.817 | 1.291 |
04 | -4.554 | -5.63 | -5.778 | 1.382 |
05 | 0.253 | -5.952 | -6.164 | 0.996 |
06 | 1.385 | -6.8 | -6.8 | -6.8 |
07 | -6.432 | 0.955 | -6.164 | 0.334 |
08 | -6.432 | -4.763 | 1.304 | -1.187 |
09 | 1.253 | -3.33 | -0.885 | -2.964 |
10 | -3.189 | 0.818 | -0.546 | 0.108 |
11 | -0.565 | 0.632 | -0.031 | -0.542 |
12 | -0.156 | 0.016 | -0.129 | 0.222 |
P-value | Threshold |
---|---|
0.001 | 4.13546 |
0.0005 | 5.338525 |
0.0001 | 7.71787 |