MotifHXD1.H12CORE.0.SM.B
Gene (human)HOXD1
(GeneCards)
Gene synonyms (human)HOX4, HOX4G
Gene (mouse)Hoxd1
Gene synonyms (mouse)Hox-4.9, Hoxd-1
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length13
ConsensusnvvYTAATTASvn
GC content33.93%
Information content (bits; total / per base)13.084 / 1.006
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words2447

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.927 0.895 0.849 0.819 0.745 0.734
best 0.949 0.919 0.908 0.872 0.821 0.795
Methyl HT-SELEX, 1 experiments median 0.906 0.872 0.789 0.766 0.668 0.673
best 0.906 0.872 0.789 0.766 0.668 0.673
Non-Methyl HT-SELEX, 1 experiments median 0.949 0.919 0.908 0.872 0.821 0.795
best 0.949 0.919 0.908 0.872 0.821 0.795
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX1 {3.1.1.1} (TFClass)
TFClass IDTFClass: 3.1.1.1.3
HGNCHGNC:5132
MGIMGI:96201
EntrezGene (human)GeneID:3231
(SSTAR profile)
EntrezGene (mouse)GeneID:15429
(SSTAR profile)
UniProt ID (human)HXD1_HUMAN
UniProt ID (mouse)HXD1_MOUSE
UniProt AC (human)Q9GZZ0
(TFClass)
UniProt AC (mouse)Q01822
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01639.0519.0549.0740.0
02652.75902.75649.75241.75
03931.0614.0892.010.0
043.01080.0385.0979.0
051.045.00.02401.0
062442.00.05.00.0
072447.00.00.00.0
080.00.00.02447.0
090.016.025.02406.0
102232.00.0213.02.0
1192.01408.0815.0132.0
12459.5977.5660.5349.5
13567.25607.25430.25842.25
PFM
ACGT
010.2610.2120.2240.302
020.2670.3690.2660.099
030.380.2510.3650.004
040.0010.4410.1570.4
050.00.0180.00.981
060.9980.00.0020.0
071.00.00.00.0
080.00.00.01.0
090.00.0070.010.983
100.9120.00.0870.001
110.0380.5750.3330.054
120.1880.3990.270.143
130.2320.2480.1760.344
PWM
ACGT
010.043-0.164-0.1080.19
020.0650.3880.06-0.924
030.4190.0040.376-3.939
04-4.820.567-0.4610.469
05-5.337-2.57-5.7511.365
061.382-5.751-4.481-5.751
071.384-5.751-5.751-5.751
08-5.751-5.751-5.7511.384
09-5.751-3.532-3.1251.367
101.292-5.751-1.049-5.046
11-1.8770.8320.286-1.522
12-0.2850.4670.076-0.557
13-0.075-0.007-0.3510.319
Standard thresholds
P-value Threshold
0.001 2.55201
0.0005 3.794415
0.0001 7.310975