Motif | HXD1.H12CORE.0.SM.B |
Gene (human) | HOXD1 (GeneCards) |
Gene synonyms (human) | HOX4, HOX4G |
Gene (mouse) | Hoxd1 |
Gene synonyms (mouse) | Hox-4.9, Hoxd-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXD1.H12CORE.0.SM.B |
Gene (human) | HOXD1 (GeneCards) |
Gene synonyms (human) | HOX4, HOX4G |
Gene (mouse) | Hoxd1 |
Gene synonyms (mouse) | Hox-4.9, Hoxd-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nvvYTAATTASvn |
GC content | 33.93% |
Information content (bits; total / per base) | 13.084 / 1.006 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 2447 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.927 | 0.895 | 0.849 | 0.819 | 0.745 | 0.734 |
best | 0.949 | 0.919 | 0.908 | 0.872 | 0.821 | 0.795 | |
Methyl HT-SELEX, 1 experiments | median | 0.906 | 0.872 | 0.789 | 0.766 | 0.668 | 0.673 |
best | 0.906 | 0.872 | 0.789 | 0.766 | 0.668 | 0.673 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.949 | 0.919 | 0.908 | 0.872 | 0.821 | 0.795 |
best | 0.949 | 0.919 | 0.908 | 0.872 | 0.821 | 0.795 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX1 {3.1.1.1} (TFClass) |
TFClass ID | TFClass: 3.1.1.1.3 |
HGNC | HGNC:5132 |
MGI | MGI:96201 |
EntrezGene (human) | GeneID:3231 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15429 (SSTAR profile) |
UniProt ID (human) | HXD1_HUMAN |
UniProt ID (mouse) | HXD1_MOUSE |
UniProt AC (human) | Q9GZZ0 (TFClass) |
UniProt AC (mouse) | Q01822 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXD1.H12CORE.0.SM.B.pcm |
PWM | HXD1.H12CORE.0.SM.B.pwm |
PFM | HXD1.H12CORE.0.SM.B.pfm |
Alignment | HXD1.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXD1.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXD1.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXD1.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXD1.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 639.0 | 519.0 | 549.0 | 740.0 |
02 | 652.75 | 902.75 | 649.75 | 241.75 |
03 | 931.0 | 614.0 | 892.0 | 10.0 |
04 | 3.0 | 1080.0 | 385.0 | 979.0 |
05 | 1.0 | 45.0 | 0.0 | 2401.0 |
06 | 2442.0 | 0.0 | 5.0 | 0.0 |
07 | 2447.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 2447.0 |
09 | 0.0 | 16.0 | 25.0 | 2406.0 |
10 | 2232.0 | 0.0 | 213.0 | 2.0 |
11 | 92.0 | 1408.0 | 815.0 | 132.0 |
12 | 459.5 | 977.5 | 660.5 | 349.5 |
13 | 567.25 | 607.25 | 430.25 | 842.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.261 | 0.212 | 0.224 | 0.302 |
02 | 0.267 | 0.369 | 0.266 | 0.099 |
03 | 0.38 | 0.251 | 0.365 | 0.004 |
04 | 0.001 | 0.441 | 0.157 | 0.4 |
05 | 0.0 | 0.018 | 0.0 | 0.981 |
06 | 0.998 | 0.0 | 0.002 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.007 | 0.01 | 0.983 |
10 | 0.912 | 0.0 | 0.087 | 0.001 |
11 | 0.038 | 0.575 | 0.333 | 0.054 |
12 | 0.188 | 0.399 | 0.27 | 0.143 |
13 | 0.232 | 0.248 | 0.176 | 0.344 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.043 | -0.164 | -0.108 | 0.19 |
02 | 0.065 | 0.388 | 0.06 | -0.924 |
03 | 0.419 | 0.004 | 0.376 | -3.939 |
04 | -4.82 | 0.567 | -0.461 | 0.469 |
05 | -5.337 | -2.57 | -5.751 | 1.365 |
06 | 1.382 | -5.751 | -4.481 | -5.751 |
07 | 1.384 | -5.751 | -5.751 | -5.751 |
08 | -5.751 | -5.751 | -5.751 | 1.384 |
09 | -5.751 | -3.532 | -3.125 | 1.367 |
10 | 1.292 | -5.751 | -1.049 | -5.046 |
11 | -1.877 | 0.832 | 0.286 | -1.522 |
12 | -0.285 | 0.467 | 0.076 | -0.557 |
13 | -0.075 | -0.007 | -0.351 | 0.319 |
P-value | Threshold |
---|---|
0.001 | 2.55201 |
0.0005 | 3.794415 |
0.0001 | 7.310975 |