MotifHXC9.H12INVIVO.1.S.C
Gene (human)HOXC9
(GeneCards)
Gene synonyms (human)HOX3B
Gene (mouse)Hoxc9
Gene synonyms (mouse)Hox-3.2, Hoxc-9
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length12
ConsensusndTTTATGRYbn
GC content34.96%
Information content (bits; total / per base)10.816 / 0.901
Data sourcesHT-SELEX
Aligned words9246

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.772 0.808 0.627 0.669 0.802 0.818 2.327 2.436 54.337 75.921
Mouse 3 (19) 0.781 0.809 0.632 0.657 0.765 0.812 2.154 2.381 82.222 89.337

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.985 0.975 0.976 0.962 0.948 0.93
best 0.989 0.981 0.982 0.971 0.951 0.936
Methyl HT-SELEX, 1 experiments median 0.989 0.981 0.982 0.971 0.951 0.936
best 0.989 0.981 0.982 0.971 0.951 0.936
Non-Methyl HT-SELEX, 1 experiments median 0.981 0.968 0.971 0.953 0.945 0.923
best 0.981 0.968 0.971 0.953 0.945 0.923
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.3
HGNCHGNC:5130
MGIMGI:96199
EntrezGene (human)GeneID:3225
(SSTAR profile)
EntrezGene (mouse)GeneID:15427
(SSTAR profile)
UniProt ID (human)HXC9_HUMAN
UniProt ID (mouse)HXC9_MOUSE
UniProt AC (human)P31274
(TFClass)
UniProt AC (mouse)P09633
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 3 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012768.752051.752390.752034.75
021891.51149.51418.54786.5
03399.031.0224.08592.0
0420.03.02.09221.0
053171.00.02.06073.0
069246.00.00.00.0
073.03420.03.05820.0
0819.036.07910.01281.0
096064.043.02858.0281.0
10175.05577.01713.01781.0
111295.53787.51870.52292.5
121990.52206.52092.52956.5
PFM
ACGT
010.2990.2220.2590.22
020.2050.1240.1530.518
030.0430.0030.0240.929
040.0020.00.00.997
050.3430.00.00.657
061.00.00.00.0
070.00.370.00.629
080.0020.0040.8560.139
090.6560.0050.3090.03
100.0190.6030.1850.193
110.140.410.2020.248
120.2150.2390.2260.32
PWM
ACGT
010.18-0.1190.034-0.127
02-0.2-0.698-0.4880.727
03-1.752-4.242-2.3251.312
04-4.643-6.082-6.2921.383
050.316-6.921-6.2920.965
061.386-6.921-6.921-6.921
07-6.0820.391-6.0820.923
08-4.689-4.1021.23-0.589
090.964-3.9340.212-2.1
10-2.5690.88-0.299-0.26
11-0.5780.493-0.211-0.008
12-0.149-0.046-0.0990.246
Standard thresholds
P-value Threshold
0.001 4.426265
0.0005 5.70517
0.0001 7.712655