MotifHXC9.H12INVIVO.0.P.B
Gene (human)HOXC9
(GeneCards)
Gene synonyms (human)HOX3B
Gene (mouse)Hoxc9
Gene synonyms (mouse)Hox-3.2, Hoxc-9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusWRATTTAYdRbh
GC content32.0%
Information content (bits; total / per base)10.986 / 0.915
Data sourcesChIP-Seq
Aligned words993

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.751 0.773 0.587 0.619 0.796 0.8 2.342 2.364 55.018 61.523
Mouse 3 (19) 0.868 0.89 0.769 0.819 0.86 0.879 3.09 3.359 117.824 171.62

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.913 0.862 0.883 0.83 0.826 0.779
best 0.923 0.875 0.893 0.843 0.831 0.788
Methyl HT-SELEX, 1 experiments median 0.923 0.875 0.893 0.843 0.831 0.788
best 0.923 0.875 0.893 0.843 0.831 0.788
Non-Methyl HT-SELEX, 1 experiments median 0.904 0.85 0.873 0.817 0.82 0.769
best 0.904 0.85 0.873 0.817 0.82 0.769
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.3
HGNCHGNC:5130
MGIMGI:96199
EntrezGene (human)GeneID:3225
(SSTAR profile)
EntrezGene (mouse)GeneID:15427
(SSTAR profile)
UniProt ID (human)HXC9_HUMAN
UniProt ID (mouse)HXC9_MOUSE
UniProt AC (human)P31274
(TFClass)
UniProt AC (mouse)P09633
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 3 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01258.015.0127.0593.0
02179.021.0697.096.0
03830.036.024.0103.0
0445.06.017.0925.0
0534.06.06.0947.0
0649.053.043.0848.0
07968.05.017.03.0
0830.0205.034.0724.0
09192.021.0483.0297.0
10172.060.0672.089.0
1197.0538.0174.0184.0
12178.0400.0153.0262.0
PFM
ACGT
010.260.0150.1280.597
020.180.0210.7020.097
030.8360.0360.0240.104
040.0450.0060.0170.932
050.0340.0060.0060.954
060.0490.0530.0430.854
070.9750.0050.0170.003
080.030.2060.0340.729
090.1930.0210.4860.299
100.1730.060.6770.09
110.0980.5420.1750.185
120.1790.4030.1540.264
PWM
ACGT
010.038-2.704-0.6640.867
02-0.324-2.3981.028-0.939
031.202-1.891-2.274-0.87
04-1.677-3.477-2.5911.31
05-1.946-3.477-3.4771.334
06-1.595-1.519-1.7211.224
071.356-3.616-2.591-3.968
08-2.064-0.19-1.9461.066
09-0.255-2.3980.6620.178
10-0.364-1.3990.991-1.014
11-0.9290.77-0.352-0.297
12-0.330.474-0.480.054
Standard thresholds
P-value Threshold
0.001 4.49017
0.0005 5.394165
0.0001 7.249495