MotifHXC9.H12INVITRO.2.M.C
Gene (human)HOXC9
(GeneCards)
Gene synonyms (human)HOX3B
Gene (mouse)Hoxc9
Gene synonyms (mouse)Hox-3.2, Hoxc-9
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
C
Motif length13
ConsensusnhTTTACGAYbnn
GC content39.46%
Information content (bits; total / per base)12.953 / 0.996
Data sourcesMethyl-HT-SELEX
Aligned words7484

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 1 (7) 0.736 0.771 0.555 0.602 0.75 0.767 2.005 2.083 33.149 43.886
Mouse 3 (19) 0.75 0.781 0.578 0.611 0.718 0.767 1.904 2.11 55.444 73.62

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.989 0.983 0.969 0.958 0.926 0.907
best 0.994 0.991 0.98 0.973 0.937 0.923
Methyl HT-SELEX, 1 experiments median 0.994 0.991 0.98 0.973 0.937 0.923
best 0.994 0.991 0.98 0.973 0.937 0.923
Non-Methyl HT-SELEX, 1 experiments median 0.985 0.975 0.958 0.942 0.915 0.891
best 0.985 0.975 0.958 0.942 0.915 0.891
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.3
HGNCHGNC:5130
MGIMGI:96199
EntrezGene (human)GeneID:3225
(SSTAR profile)
EntrezGene (mouse)GeneID:15427
(SSTAR profile)
UniProt ID (human)HXC9_HUMAN
UniProt ID (mouse)HXC9_MOUSE
UniProt AC (human)P31274
(TFClass)
UniProt AC (mouse)P09633
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 1 human, 3 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012103.751969.751810.751599.75
021406.751224.751154.753697.75
03325.021.0135.07003.0
0412.04.02.07466.0
051885.00.01.05598.0
067484.00.00.00.0
070.05864.00.01620.0
080.00.07428.056.0
097120.02.0330.032.0
108.05397.0687.01392.0
11996.03423.01865.01200.0
121442.751913.751391.752735.75
131762.252208.251561.251952.25
PFM
ACGT
010.2810.2630.2420.214
020.1880.1640.1540.494
030.0430.0030.0180.936
040.0020.0010.00.998
050.2520.00.00.748
061.00.00.00.0
070.00.7840.00.216
080.00.00.9930.007
090.9510.00.0440.004
100.0010.7210.0920.186
110.1330.4570.2490.16
120.1930.2560.1860.366
130.2350.2950.2090.261
PWM
ACGT
010.1170.051-0.033-0.156
02-0.285-0.423-0.4820.681
03-1.745-4.39-2.6141.319
04-4.88-5.706-6.0931.383
050.007-6.733-6.3631.095
061.385-6.733-6.733-6.733
07-6.7331.142-6.733-0.144
08-6.733-6.7331.378-3.471
091.336-6.093-1.73-4.002
10-5.211.059-1.0-0.295
11-0.6290.604-0.003-0.443
12-0.260.023-0.2960.38
13-0.060.166-0.1810.042
Standard thresholds
P-value Threshold
0.001 2.65736
0.0005 4.20986
0.0001 7.424185