Motif | HXC9.H12CORE.0.P.B |
Gene (human) | HOXC9 (GeneCards) |
Gene synonyms (human) | HOX3B |
Gene (mouse) | Hoxc9 |
Gene synonyms (mouse) | Hox-3.2, Hoxc-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXC9.H12CORE.0.P.B |
Gene (human) | HOXC9 (GeneCards) |
Gene synonyms (human) | HOX3B |
Gene (mouse) | Hoxc9 |
Gene synonyms (mouse) | Hox-3.2, Hoxc-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | WRATTTAYdRbh |
GC content | 32.0% |
Information content (bits; total / per base) | 10.986 / 0.915 |
Data sources | ChIP-Seq |
Aligned words | 993 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 1 (7) | 0.751 | 0.773 | 0.587 | 0.619 | 0.796 | 0.8 | 2.342 | 2.364 | 55.018 | 61.523 |
Mouse | 3 (19) | 0.868 | 0.89 | 0.769 | 0.819 | 0.86 | 0.879 | 3.09 | 3.359 | 117.824 | 171.62 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.913 | 0.862 | 0.883 | 0.83 | 0.826 | 0.779 |
best | 0.923 | 0.875 | 0.893 | 0.843 | 0.831 | 0.788 | |
Methyl HT-SELEX, 1 experiments | median | 0.923 | 0.875 | 0.893 | 0.843 | 0.831 | 0.788 |
best | 0.923 | 0.875 | 0.893 | 0.843 | 0.831 | 0.788 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.904 | 0.85 | 0.873 | 0.817 | 0.82 | 0.769 |
best | 0.904 | 0.85 | 0.873 | 0.817 | 0.82 | 0.769 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.3 |
HGNC | HGNC:5130 |
MGI | MGI:96199 |
EntrezGene (human) | GeneID:3225 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15427 (SSTAR profile) |
UniProt ID (human) | HXC9_HUMAN |
UniProt ID (mouse) | HXC9_MOUSE |
UniProt AC (human) | P31274 (TFClass) |
UniProt AC (mouse) | P09633 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 1 human, 3 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXC9.H12CORE.0.P.B.pcm |
PWM | HXC9.H12CORE.0.P.B.pwm |
PFM | HXC9.H12CORE.0.P.B.pfm |
Alignment | HXC9.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | HXC9.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | HXC9.H12CORE.0.P.B_jaspar_format.txt |
MEME format | HXC9.H12CORE.0.P.B_meme_format.meme |
Transfac format | HXC9.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 258.0 | 15.0 | 127.0 | 593.0 |
02 | 179.0 | 21.0 | 697.0 | 96.0 |
03 | 830.0 | 36.0 | 24.0 | 103.0 |
04 | 45.0 | 6.0 | 17.0 | 925.0 |
05 | 34.0 | 6.0 | 6.0 | 947.0 |
06 | 49.0 | 53.0 | 43.0 | 848.0 |
07 | 968.0 | 5.0 | 17.0 | 3.0 |
08 | 30.0 | 205.0 | 34.0 | 724.0 |
09 | 192.0 | 21.0 | 483.0 | 297.0 |
10 | 172.0 | 60.0 | 672.0 | 89.0 |
11 | 97.0 | 538.0 | 174.0 | 184.0 |
12 | 178.0 | 400.0 | 153.0 | 262.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.26 | 0.015 | 0.128 | 0.597 |
02 | 0.18 | 0.021 | 0.702 | 0.097 |
03 | 0.836 | 0.036 | 0.024 | 0.104 |
04 | 0.045 | 0.006 | 0.017 | 0.932 |
05 | 0.034 | 0.006 | 0.006 | 0.954 |
06 | 0.049 | 0.053 | 0.043 | 0.854 |
07 | 0.975 | 0.005 | 0.017 | 0.003 |
08 | 0.03 | 0.206 | 0.034 | 0.729 |
09 | 0.193 | 0.021 | 0.486 | 0.299 |
10 | 0.173 | 0.06 | 0.677 | 0.09 |
11 | 0.098 | 0.542 | 0.175 | 0.185 |
12 | 0.179 | 0.403 | 0.154 | 0.264 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.038 | -2.704 | -0.664 | 0.867 |
02 | -0.324 | -2.398 | 1.028 | -0.939 |
03 | 1.202 | -1.891 | -2.274 | -0.87 |
04 | -1.677 | -3.477 | -2.591 | 1.31 |
05 | -1.946 | -3.477 | -3.477 | 1.334 |
06 | -1.595 | -1.519 | -1.721 | 1.224 |
07 | 1.356 | -3.616 | -2.591 | -3.968 |
08 | -2.064 | -0.19 | -1.946 | 1.066 |
09 | -0.255 | -2.398 | 0.662 | 0.178 |
10 | -0.364 | -1.399 | 0.991 | -1.014 |
11 | -0.929 | 0.77 | -0.352 | -0.297 |
12 | -0.33 | 0.474 | -0.48 | 0.054 |
P-value | Threshold |
---|---|
0.001 | 4.49017 |
0.0005 | 5.394165 |
0.0001 | 7.249495 |