Motif | HXC8.H12CORE.0.SM.B |
Gene (human) | HOXC8 (GeneCards) |
Gene synonyms (human) | HOX3A |
Gene (mouse) | Hoxc8 |
Gene synonyms (mouse) | Hox-3.1, Hoxc-8 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXC8.H12CORE.0.SM.B |
Gene (human) | HOXC8 (GeneCards) |
Gene synonyms (human) | HOX3A |
Gene (mouse) | Hoxc8 |
Gene synonyms (mouse) | Hox-3.1, Hoxc-8 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nhvYTAATGRSbn |
GC content | 39.58% |
Information content (bits; total / per base) | 10.667 / 0.821 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9037 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.967 | 0.945 | 0.949 | 0.921 | 0.9 | 0.872 |
best | 0.968 | 0.947 | 0.952 | 0.924 | 0.917 | 0.886 | |
Methyl HT-SELEX, 1 experiments | median | 0.966 | 0.944 | 0.947 | 0.918 | 0.882 | 0.857 |
best | 0.966 | 0.944 | 0.947 | 0.918 | 0.882 | 0.857 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.968 | 0.947 | 0.952 | 0.924 | 0.917 | 0.886 |
best | 0.968 | 0.947 | 0.952 | 0.924 | 0.917 | 0.886 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX8 {3.1.1.7} (TFClass) |
TFClass ID | TFClass: 3.1.1.7.2 |
HGNC | HGNC:5129 |
MGI | MGI:96198 |
EntrezGene (human) | GeneID:3224 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15426 (SSTAR profile) |
UniProt ID (human) | HXC8_HUMAN |
UniProt ID (mouse) | HXC8_MOUSE |
UniProt AC (human) | P31273 (TFClass) |
UniProt AC (mouse) | P09025 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXC8.H12CORE.0.SM.B.pcm |
PWM | HXC8.H12CORE.0.SM.B.pwm |
PFM | HXC8.H12CORE.0.SM.B.pfm |
Alignment | HXC8.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXC8.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXC8.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXC8.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXC8.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2062.75 | 2473.75 | 2267.75 | 2232.75 |
02 | 1827.75 | 4214.75 | 1328.75 | 1665.75 |
03 | 2818.0 | 2667.0 | 2739.0 | 813.0 |
04 | 1070.0 | 1267.0 | 879.0 | 5821.0 |
05 | 10.0 | 2.0 | 0.0 | 9025.0 |
06 | 9037.0 | 0.0 | 0.0 | 0.0 |
07 | 9037.0 | 0.0 | 0.0 | 0.0 |
08 | 1.0 | 2266.0 | 0.0 | 6770.0 |
09 | 33.0 | 8.0 | 5743.0 | 3253.0 |
10 | 5991.0 | 24.0 | 2903.0 | 119.0 |
11 | 289.0 | 5826.0 | 1751.0 | 1171.0 |
12 | 1424.0 | 3712.0 | 2323.0 | 1578.0 |
13 | 2416.5 | 2348.5 | 1757.5 | 2514.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.228 | 0.274 | 0.251 | 0.247 |
02 | 0.202 | 0.466 | 0.147 | 0.184 |
03 | 0.312 | 0.295 | 0.303 | 0.09 |
04 | 0.118 | 0.14 | 0.097 | 0.644 |
05 | 0.001 | 0.0 | 0.0 | 0.999 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.251 | 0.0 | 0.749 |
09 | 0.004 | 0.001 | 0.635 | 0.36 |
10 | 0.663 | 0.003 | 0.321 | 0.013 |
11 | 0.032 | 0.645 | 0.194 | 0.13 |
12 | 0.158 | 0.411 | 0.257 | 0.175 |
13 | 0.267 | 0.26 | 0.194 | 0.278 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.091 | 0.091 | 0.004 | -0.012 |
02 | -0.212 | 0.623 | -0.53 | -0.304 |
03 | 0.221 | 0.166 | 0.192 | -1.02 |
04 | -0.746 | -0.578 | -0.942 | 0.946 |
05 | -5.216 | -6.27 | -6.901 | 1.384 |
06 | 1.386 | -6.901 | -6.901 | -6.901 |
07 | 1.386 | -6.901 | -6.901 | -6.901 |
08 | -6.537 | 0.003 | -6.901 | 1.097 |
09 | -4.161 | -5.394 | 0.932 | 0.364 |
10 | 0.975 | -4.455 | 0.25 | -2.926 |
11 | -2.05 | 0.947 | -0.255 | -0.656 |
12 | -0.461 | 0.496 | 0.028 | -0.358 |
13 | 0.067 | 0.039 | -0.251 | 0.107 |
P-value | Threshold |
---|---|
0.001 | 4.81931 |
0.0005 | 5.95836 |
0.0001 | 7.62086 |