Motif | HXC4.H12CORE.0.SM.B |
Gene (human) | HOXC4 (GeneCards) |
Gene synonyms (human) | HOX3E |
Gene (mouse) | Hoxc4 |
Gene synonyms (mouse) | Hox-3.5, Hoxc-4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXC4.H12CORE.0.SM.B |
Gene (human) | HOXC4 (GeneCards) |
Gene synonyms (human) | HOX3E |
Gene (mouse) | Hoxc4 |
Gene synonyms (mouse) | Hox-3.5, Hoxc-4 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nbvYTAATKAbbn |
GC content | 36.04% |
Information content (bits; total / per base) | 11.786 / 0.907 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9636 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.982 | 0.969 | 0.957 | 0.94 | 0.849 | 0.85 |
best | 0.983 | 0.97 | 0.97 | 0.953 | 0.931 | 0.911 | |
Methyl HT-SELEX, 1 experiments | median | 0.981 | 0.969 | 0.944 | 0.926 | 0.766 | 0.79 |
best | 0.981 | 0.969 | 0.944 | 0.926 | 0.766 | 0.79 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.983 | 0.97 | 0.97 | 0.953 | 0.931 | 0.911 |
best | 0.983 | 0.97 | 0.97 | 0.953 | 0.931 | 0.911 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX4 {3.1.1.4} (TFClass) |
TFClass ID | TFClass: 3.1.1.4.3 |
HGNC | HGNC:5126 |
MGI | MGI:96195 |
EntrezGene (human) | GeneID:3221 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15423 (SSTAR profile) |
UniProt ID (human) | HXC4_HUMAN |
UniProt ID (mouse) | HXC4_MOUSE |
UniProt AC (human) | P09017 (TFClass) |
UniProt AC (mouse) | Q08624 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXC4.H12CORE.0.SM.B.pcm |
PWM | HXC4.H12CORE.0.SM.B.pwm |
PFM | HXC4.H12CORE.0.SM.B.pfm |
Alignment | HXC4.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXC4.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXC4.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXC4.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXC4.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3225.25 | 2076.25 | 2113.25 | 2221.25 |
02 | 1717.25 | 4318.25 | 1786.25 | 1814.25 |
03 | 2434.0 | 2516.0 | 4328.0 | 358.0 |
04 | 401.0 | 3988.0 | 276.0 | 4971.0 |
05 | 0.0 | 0.0 | 0.0 | 9636.0 |
06 | 9636.0 | 0.0 | 0.0 | 0.0 |
07 | 9636.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 220.0 | 0.0 | 9416.0 |
09 | 3.0 | 6.0 | 5098.0 | 4529.0 |
10 | 8584.0 | 10.0 | 1039.0 | 3.0 |
11 | 597.0 | 4375.0 | 1748.0 | 2916.0 |
12 | 1489.75 | 3734.75 | 2568.75 | 1842.75 |
13 | 2271.5 | 2742.5 | 2198.5 | 2423.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.335 | 0.215 | 0.219 | 0.231 |
02 | 0.178 | 0.448 | 0.185 | 0.188 |
03 | 0.253 | 0.261 | 0.449 | 0.037 |
04 | 0.042 | 0.414 | 0.029 | 0.516 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.023 | 0.0 | 0.977 |
09 | 0.0 | 0.001 | 0.529 | 0.47 |
10 | 0.891 | 0.001 | 0.108 | 0.0 |
11 | 0.062 | 0.454 | 0.181 | 0.303 |
12 | 0.155 | 0.388 | 0.267 | 0.191 |
13 | 0.236 | 0.285 | 0.228 | 0.252 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.292 | -0.148 | -0.131 | -0.081 |
02 | -0.338 | 0.583 | -0.299 | -0.283 |
03 | 0.01 | 0.043 | 0.585 | -1.901 |
04 | -1.788 | 0.504 | -2.159 | 0.724 |
05 | -6.958 | -6.958 | -6.958 | 1.386 |
06 | 1.386 | -6.958 | -6.958 | -6.958 |
07 | 1.386 | -6.958 | -6.958 | -6.958 |
08 | -6.958 | -2.384 | -6.958 | 1.362 |
09 | -6.121 | -5.672 | 0.749 | 0.631 |
10 | 1.27 | -5.279 | -0.84 | -6.121 |
11 | -1.392 | 0.596 | -0.32 | 0.191 |
12 | -0.48 | 0.438 | 0.064 | -0.268 |
13 | -0.059 | 0.13 | -0.091 | 0.006 |
P-value | Threshold |
---|---|
0.001 | 3.11931 |
0.0005 | 5.18676 |
0.0001 | 7.88546 |