| Motif | HXC13.H12RSNP.0.SM.D |
| Gene (human) | HOXC13 (GeneCards) |
| Gene synonyms (human) | HOX3G |
| Gene (mouse) | Hoxc13 |
| Gene synonyms (mouse) | Hoxc-13 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXC13.H12RSNP.0.SM.D |
| Gene (human) | HOXC13 (GeneCards) |
| Gene synonyms (human) | HOX3G |
| Gene (mouse) | Hoxc13 |
| Gene synonyms (mouse) | Hoxc-13 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | ndTTTACGAGvn |
| GC content | 41.06% |
| Information content (bits; total / per base) | 14.115 / 1.176 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9145 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.991 | 0.987 | 0.915 | 0.917 | 0.818 | 0.831 |
| best | 0.999 | 0.998 | 0.997 | 0.996 | 0.985 | 0.981 | |
| Methyl HT-SELEX, 1 experiments | median | 0.999 | 0.998 | 0.997 | 0.996 | 0.985 | 0.981 |
| best | 0.999 | 0.998 | 0.997 | 0.996 | 0.985 | 0.981 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.984 | 0.977 | 0.838 | 0.845 | 0.675 | 0.71 |
| best | 0.998 | 0.996 | 0.992 | 0.989 | 0.961 | 0.953 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.16 |
| HGNC | HGNC:5125 |
| MGI | MGI:99560 |
| EntrezGene (human) | GeneID:3229 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15422 (SSTAR profile) |
| UniProt ID (human) | HXC13_HUMAN |
| UniProt ID (mouse) | HXC13_MOUSE |
| UniProt AC (human) | P31276 (TFClass) |
| UniProt AC (mouse) | P50207 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | HXC13.H12RSNP.0.SM.D.pcm |
| PWM | HXC13.H12RSNP.0.SM.D.pwm |
| PFM | HXC13.H12RSNP.0.SM.D.pfm |
| Alignment | HXC13.H12RSNP.0.SM.D.words.tsv |
| Threshold to P-value map | HXC13.H12RSNP.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXC13.H12RSNP.0.SM.D_jaspar_format.txt |
| MEME format | HXC13.H12RSNP.0.SM.D_meme_format.meme |
| Transfac format | HXC13.H12RSNP.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2155.75 | 1841.75 | 3223.75 | 1923.75 |
| 02 | 1567.5 | 874.5 | 2058.5 | 4644.5 |
| 03 | 180.0 | 39.0 | 187.0 | 8739.0 |
| 04 | 93.0 | 4.0 | 2.0 | 9046.0 |
| 05 | 650.0 | 5.0 | 2.0 | 8488.0 |
| 06 | 9143.0 | 1.0 | 0.0 | 1.0 |
| 07 | 0.0 | 8035.0 | 1.0 | 1109.0 |
| 08 | 69.0 | 1.0 | 9027.0 | 48.0 |
| 09 | 8966.0 | 27.0 | 120.0 | 32.0 |
| 10 | 37.0 | 678.0 | 7905.0 | 525.0 |
| 11 | 1569.5 | 3508.5 | 2948.5 | 1118.5 |
| 12 | 1839.75 | 2176.75 | 2390.75 | 2737.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.236 | 0.201 | 0.353 | 0.21 |
| 02 | 0.171 | 0.096 | 0.225 | 0.508 |
| 03 | 0.02 | 0.004 | 0.02 | 0.956 |
| 04 | 0.01 | 0.0 | 0.0 | 0.989 |
| 05 | 0.071 | 0.001 | 0.0 | 0.928 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.879 | 0.0 | 0.121 |
| 08 | 0.008 | 0.0 | 0.987 | 0.005 |
| 09 | 0.98 | 0.003 | 0.013 | 0.003 |
| 10 | 0.004 | 0.074 | 0.864 | 0.057 |
| 11 | 0.172 | 0.384 | 0.322 | 0.122 |
| 12 | 0.201 | 0.238 | 0.261 | 0.299 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.059 | -0.216 | 0.343 | -0.172 |
| 02 | -0.377 | -0.959 | -0.105 | 0.708 |
| 03 | -2.53 | -4.015 | -2.492 | 1.34 |
| 04 | -3.179 | -5.898 | -6.282 | 1.375 |
| 05 | -1.255 | -5.751 | -6.282 | 1.311 |
| 06 | 1.385 | -6.548 | -6.911 | -6.548 |
| 07 | -6.911 | 1.256 | -6.548 | -0.722 |
| 08 | -3.469 | -6.548 | 1.373 | -3.818 |
| 09 | 1.366 | -4.359 | -2.929 | -4.201 |
| 10 | -4.065 | -1.213 | 1.24 | -1.468 |
| 11 | -0.376 | 0.428 | 0.254 | -0.714 |
| 12 | -0.217 | -0.049 | 0.045 | 0.18 |
| P-value | Threshold |
|---|---|
| 0.001 | 2.23387 |
| 0.0005 | 3.655845 |
| 0.0001 | 6.66831 |