MotifHXC13.H12INVITRO.0.SM.B
Gene (human)HOXC13
(GeneCards)
Gene synonyms (human)HOX3G
Gene (mouse)Hoxc13
Gene synonyms (mouse)Hoxc-13
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusndTTTACGAGvn
GC content41.06%
Information content (bits; total / per base)14.115 / 1.176
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9145

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 4 experiments median 0.991 0.987 0.915 0.917 0.818 0.831
best 0.999 0.998 0.997 0.996 0.985 0.981
Methyl HT-SELEX, 1 experiments median 0.999 0.998 0.997 0.996 0.985 0.981
best 0.999 0.998 0.997 0.996 0.985 0.981
Non-Methyl HT-SELEX, 3 experiments median 0.984 0.977 0.838 0.845 0.675 0.71
best 0.998 0.996 0.992 0.989 0.961 0.953
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.16
HGNCHGNC:5125
MGIMGI:99560
EntrezGene (human)GeneID:3229
(SSTAR profile)
EntrezGene (mouse)GeneID:15422
(SSTAR profile)
UniProt ID (human)HXC13_HUMAN
UniProt ID (mouse)HXC13_MOUSE
UniProt AC (human)P31276
(TFClass)
UniProt AC (mouse)P50207
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 3
Methyl-HT-SELEX 1
PCM
ACGT
012155.751841.753223.751923.75
021567.5874.52058.54644.5
03180.039.0187.08739.0
0493.04.02.09046.0
05650.05.02.08488.0
069143.01.00.01.0
070.08035.01.01109.0
0869.01.09027.048.0
098966.027.0120.032.0
1037.0678.07905.0525.0
111569.53508.52948.51118.5
121839.752176.752390.752737.75
PFM
ACGT
010.2360.2010.3530.21
020.1710.0960.2250.508
030.020.0040.020.956
040.010.00.00.989
050.0710.0010.00.928
061.00.00.00.0
070.00.8790.00.121
080.0080.00.9870.005
090.980.0030.0130.003
100.0040.0740.8640.057
110.1720.3840.3220.122
120.2010.2380.2610.299
PWM
ACGT
01-0.059-0.2160.343-0.172
02-0.377-0.959-0.1050.708
03-2.53-4.015-2.4921.34
04-3.179-5.898-6.2821.375
05-1.255-5.751-6.2821.311
061.385-6.548-6.911-6.548
07-6.9111.256-6.548-0.722
08-3.469-6.5481.373-3.818
091.366-4.359-2.929-4.201
10-4.065-1.2131.24-1.468
11-0.3760.4280.254-0.714
12-0.217-0.0490.0450.18
Standard thresholds
P-value Threshold
0.001 2.23387
0.0005 3.655845
0.0001 6.66831