| Motif | HXC12.H12INVIVO.0.SM.D |
| Gene (human) | HOXC12 (GeneCards) |
| Gene synonyms (human) | HOC3F, HOX3F |
| Gene (mouse) | Hoxc12 |
| Gene synonyms (mouse) | Hox-3.8, Hoxc-12 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXC12.H12INVIVO.0.SM.D |
| Gene (human) | HOXC12 (GeneCards) |
| Gene synonyms (human) | HOC3F, HOX3F |
| Gene (mouse) | Hoxc12 |
| Gene synonyms (mouse) | Hox-3.8, Hoxc-12 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nKTTTACGASn |
| GC content | 35.94% |
| Information content (bits; total / per base) | 12.839 / 1.167 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 1598 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 4 experiments | median | 0.937 | 0.919 | 0.832 | 0.815 | 0.701 | 0.709 |
| best | 0.996 | 0.994 | 0.989 | 0.985 | 0.933 | 0.926 | |
| Methyl HT-SELEX, 1 experiments | median | 0.971 | 0.961 | 0.874 | 0.86 | 0.737 | 0.744 |
| best | 0.971 | 0.961 | 0.874 | 0.86 | 0.737 | 0.744 | |
| Non-Methyl HT-SELEX, 3 experiments | median | 0.902 | 0.878 | 0.79 | 0.769 | 0.665 | 0.673 |
| best | 0.996 | 0.994 | 0.989 | 0.985 | 0.933 | 0.926 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.12 |
| HGNC | HGNC:5124 |
| MGI | MGI:96194 |
| EntrezGene (human) | GeneID:3228 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15421 (SSTAR profile) |
| UniProt ID (human) | HXC12_HUMAN |
| UniProt ID (mouse) | HXC12_MOUSE |
| UniProt AC (human) | P31275 (TFClass) |
| UniProt AC (mouse) | Q8K5B8 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 3 |
| Methyl-HT-SELEX | 1 |
| PCM | HXC12.H12INVIVO.0.SM.D.pcm |
| PWM | HXC12.H12INVIVO.0.SM.D.pwm |
| PFM | HXC12.H12INVIVO.0.SM.D.pfm |
| Alignment | HXC12.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | HXC12.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXC12.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | HXC12.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | HXC12.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 375.5 | 354.5 | 402.5 | 465.5 |
| 02 | 177.5 | 148.5 | 270.5 | 1001.5 |
| 03 | 67.0 | 4.0 | 11.0 | 1516.0 |
| 04 | 4.0 | 0.0 | 0.0 | 1594.0 |
| 05 | 103.0 | 0.0 | 0.0 | 1495.0 |
| 06 | 1598.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 1321.0 | 0.0 | 277.0 |
| 08 | 2.0 | 34.0 | 1487.0 | 75.0 |
| 09 | 1502.0 | 7.0 | 86.0 | 3.0 |
| 10 | 15.5 | 804.5 | 409.5 | 368.5 |
| 11 | 206.5 | 567.5 | 410.5 | 413.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.235 | 0.222 | 0.252 | 0.291 |
| 02 | 0.111 | 0.093 | 0.169 | 0.627 |
| 03 | 0.042 | 0.003 | 0.007 | 0.949 |
| 04 | 0.003 | 0.0 | 0.0 | 0.997 |
| 05 | 0.064 | 0.0 | 0.0 | 0.936 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.827 | 0.0 | 0.173 |
| 08 | 0.001 | 0.021 | 0.931 | 0.047 |
| 09 | 0.94 | 0.004 | 0.054 | 0.002 |
| 10 | 0.01 | 0.503 | 0.256 | 0.231 |
| 11 | 0.129 | 0.355 | 0.257 | 0.259 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.062 | -0.119 | 0.007 | 0.152 |
| 02 | -0.806 | -0.982 | -0.388 | 0.916 |
| 03 | -1.763 | -4.229 | -3.442 | 1.33 |
| 04 | -4.229 | -5.383 | -5.383 | 1.38 |
| 05 | -1.342 | -5.383 | -5.383 | 1.316 |
| 06 | 1.383 | -5.383 | -5.383 | -5.383 |
| 07 | -5.383 | 1.193 | -5.383 | -0.364 |
| 08 | -4.648 | -2.416 | 1.311 | -1.653 |
| 09 | 1.321 | -3.815 | -1.519 | -4.417 |
| 10 | -3.142 | 0.698 | 0.025 | -0.08 |
| 11 | -0.656 | 0.35 | 0.027 | 0.034 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.337075 |
| 0.0005 | 4.594105 |
| 0.0001 | 7.279325 |