Motif | HXC12.H12CORE.0.SM.B |
Gene (human) | HOXC12 (GeneCards) |
Gene synonyms (human) | HOC3F, HOX3F |
Gene (mouse) | Hoxc12 |
Gene synonyms (mouse) | Hox-3.8, Hoxc-12 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXC12.H12CORE.0.SM.B |
Gene (human) | HOXC12 (GeneCards) |
Gene synonyms (human) | HOC3F, HOX3F |
Gene (mouse) | Hoxc12 |
Gene synonyms (mouse) | Hox-3.8, Hoxc-12 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 11 |
Consensus | nKTTTACGASn |
GC content | 35.94% |
Information content (bits; total / per base) | 12.839 / 1.167 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 1598 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.937 | 0.919 | 0.832 | 0.815 | 0.701 | 0.709 |
best | 0.996 | 0.994 | 0.989 | 0.985 | 0.933 | 0.926 | |
Methyl HT-SELEX, 1 experiments | median | 0.971 | 0.961 | 0.874 | 0.86 | 0.737 | 0.744 |
best | 0.971 | 0.961 | 0.874 | 0.86 | 0.737 | 0.744 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.902 | 0.878 | 0.79 | 0.769 | 0.665 | 0.673 |
best | 0.996 | 0.994 | 0.989 | 0.985 | 0.933 | 0.926 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.12 |
HGNC | HGNC:5124 |
MGI | MGI:96194 |
EntrezGene (human) | GeneID:3228 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15421 (SSTAR profile) |
UniProt ID (human) | HXC12_HUMAN |
UniProt ID (mouse) | HXC12_MOUSE |
UniProt AC (human) | P31275 (TFClass) |
UniProt AC (mouse) | Q8K5B8 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | HXC12.H12CORE.0.SM.B.pcm |
PWM | HXC12.H12CORE.0.SM.B.pwm |
PFM | HXC12.H12CORE.0.SM.B.pfm |
Alignment | HXC12.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXC12.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXC12.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXC12.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXC12.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 375.5 | 354.5 | 402.5 | 465.5 |
02 | 177.5 | 148.5 | 270.5 | 1001.5 |
03 | 67.0 | 4.0 | 11.0 | 1516.0 |
04 | 4.0 | 0.0 | 0.0 | 1594.0 |
05 | 103.0 | 0.0 | 0.0 | 1495.0 |
06 | 1598.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 1321.0 | 0.0 | 277.0 |
08 | 2.0 | 34.0 | 1487.0 | 75.0 |
09 | 1502.0 | 7.0 | 86.0 | 3.0 |
10 | 15.5 | 804.5 | 409.5 | 368.5 |
11 | 206.5 | 567.5 | 410.5 | 413.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.235 | 0.222 | 0.252 | 0.291 |
02 | 0.111 | 0.093 | 0.169 | 0.627 |
03 | 0.042 | 0.003 | 0.007 | 0.949 |
04 | 0.003 | 0.0 | 0.0 | 0.997 |
05 | 0.064 | 0.0 | 0.0 | 0.936 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.827 | 0.0 | 0.173 |
08 | 0.001 | 0.021 | 0.931 | 0.047 |
09 | 0.94 | 0.004 | 0.054 | 0.002 |
10 | 0.01 | 0.503 | 0.256 | 0.231 |
11 | 0.129 | 0.355 | 0.257 | 0.259 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.062 | -0.119 | 0.007 | 0.152 |
02 | -0.806 | -0.982 | -0.388 | 0.916 |
03 | -1.763 | -4.229 | -3.442 | 1.33 |
04 | -4.229 | -5.383 | -5.383 | 1.38 |
05 | -1.342 | -5.383 | -5.383 | 1.316 |
06 | 1.383 | -5.383 | -5.383 | -5.383 |
07 | -5.383 | 1.193 | -5.383 | -0.364 |
08 | -4.648 | -2.416 | 1.311 | -1.653 |
09 | 1.321 | -3.815 | -1.519 | -4.417 |
10 | -3.142 | 0.698 | 0.025 | -0.08 |
11 | -0.656 | 0.35 | 0.027 | 0.034 |
P-value | Threshold |
---|---|
0.001 | 3.337075 |
0.0005 | 4.594105 |
0.0001 | 7.279325 |