| Motif | HXC11.H12INVIVO.0.SM.D |
| Gene (human) | HOXC11 (GeneCards) |
| Gene synonyms (human) | HOX3H |
| Gene (mouse) | Hoxc11 |
| Gene synonyms (mouse) | Hox-3.7, Hoxc-11 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXC11.H12INVIVO.0.SM.D |
| Gene (human) | HOXC11 (GeneCards) |
| Gene synonyms (human) | HOX3H |
| Gene (mouse) | Hoxc11 |
| Gene synonyms (mouse) | Hox-3.7, Hoxc-11 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 11 |
| Consensus | nTTTACGAYbn |
| GC content | 38.72% |
| Information content (bits; total / per base) | 11.932 / 1.085 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9377 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 10 experiments | median | 0.991 | 0.985 | 0.961 | 0.951 | 0.864 | 0.856 |
| best | 0.999 | 0.999 | 0.999 | 0.998 | 0.982 | 0.98 | |
| Methyl HT-SELEX, 3 experiments | median | 0.996 | 0.993 | 0.988 | 0.983 | 0.947 | 0.938 |
| best | 0.999 | 0.999 | 0.999 | 0.998 | 0.982 | 0.98 | |
| Non-Methyl HT-SELEX, 7 experiments | median | 0.82 | 0.789 | 0.725 | 0.698 | 0.645 | 0.634 |
| best | 0.998 | 0.997 | 0.995 | 0.993 | 0.946 | 0.943 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.10 |
| HGNC | HGNC:5123 |
| MGI | MGI:96193 |
| EntrezGene (human) | GeneID:3227 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:109663 (SSTAR profile) |
| UniProt ID (human) | HXC11_HUMAN |
| UniProt ID (mouse) | HXC11_MOUSE |
| UniProt AC (human) | O43248 (TFClass) |
| UniProt AC (mouse) | P31313 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 7 |
| Methyl-HT-SELEX | 3 |
| PCM | HXC11.H12INVIVO.0.SM.D.pcm |
| PWM | HXC11.H12INVIVO.0.SM.D.pwm |
| PFM | HXC11.H12INVIVO.0.SM.D.pfm |
| Alignment | HXC11.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | HXC11.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXC11.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | HXC11.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | HXC11.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2032.5 | 1811.5 | 1883.5 | 3649.5 |
| 02 | 722.5 | 257.5 | 730.5 | 7666.5 |
| 03 | 104.0 | 58.0 | 29.0 | 9186.0 |
| 04 | 2910.0 | 15.0 | 1.0 | 6451.0 |
| 05 | 9376.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 8496.0 | 0.0 | 881.0 |
| 07 | 10.0 | 12.0 | 9287.0 | 68.0 |
| 08 | 8889.0 | 105.0 | 204.0 | 179.0 |
| 09 | 53.0 | 5637.0 | 981.0 | 2706.0 |
| 10 | 1520.5 | 3785.5 | 2493.5 | 1577.5 |
| 11 | 1952.5 | 2499.5 | 1652.5 | 3272.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.217 | 0.193 | 0.201 | 0.389 |
| 02 | 0.077 | 0.027 | 0.078 | 0.818 |
| 03 | 0.011 | 0.006 | 0.003 | 0.98 |
| 04 | 0.31 | 0.002 | 0.0 | 0.688 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.906 | 0.0 | 0.094 |
| 07 | 0.001 | 0.001 | 0.99 | 0.007 |
| 08 | 0.948 | 0.011 | 0.022 | 0.019 |
| 09 | 0.006 | 0.601 | 0.105 | 0.289 |
| 10 | 0.162 | 0.404 | 0.266 | 0.168 |
| 11 | 0.208 | 0.267 | 0.176 | 0.349 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.143 | -0.258 | -0.219 | 0.442 |
| 02 | -1.175 | -2.201 | -1.164 | 1.184 |
| 03 | -3.095 | -3.662 | -4.318 | 1.365 |
| 04 | 0.216 | -4.911 | -6.571 | 1.012 |
| 05 | 1.385 | -6.934 | -6.571 | -6.934 |
| 06 | -6.934 | 1.287 | -6.934 | -0.977 |
| 07 | -5.252 | -5.101 | 1.376 | -3.508 |
| 08 | 1.332 | -3.085 | -2.431 | -2.561 |
| 09 | -3.748 | 0.877 | -0.87 | 0.143 |
| 10 | -0.432 | 0.479 | 0.062 | -0.396 |
| 11 | -0.183 | 0.064 | -0.349 | 0.333 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.74866 |
| 0.0005 | 5.05085 |
| 0.0001 | 7.44843 |