| Motif | HXB9.H12INVIVO.1.M.D |
| Gene (human) | HOXB9 (GeneCards) |
| Gene synonyms (human) | HOX2E |
| Gene (mouse) | Hoxb9 |
| Gene synonyms (mouse) | Hox-2.5, Hoxb-9 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | HXB9.H12INVIVO.1.M.D |
| Gene (human) | HOXB9 (GeneCards) |
| Gene synonyms (human) | HOX2E |
| Gene (mouse) | Hoxb9 |
| Gene synonyms (mouse) | Hox-2.5, Hoxb-9 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | nWTWACGAYvn |
| GC content | 38.36% |
| Information content (bits; total / per base) | 10.782 / 0.98 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 6951 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.889 | 0.858 | 0.807 | 0.776 | 0.721 | 0.703 |
| best | 0.939 | 0.914 | 0.875 | 0.842 | 0.789 | 0.763 | |
| Methyl HT-SELEX, 1 experiments | median | 0.939 | 0.914 | 0.875 | 0.842 | 0.789 | 0.763 |
| best | 0.939 | 0.914 | 0.875 | 0.842 | 0.789 | 0.763 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.84 | 0.802 | 0.738 | 0.709 | 0.654 | 0.643 |
| best | 0.84 | 0.802 | 0.738 | 0.709 | 0.654 | 0.643 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.2 |
| HGNC | HGNC:5120 |
| MGI | MGI:96190 |
| EntrezGene (human) | GeneID:3219 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15417 (SSTAR profile) |
| UniProt ID (human) | HXB9_HUMAN |
| UniProt ID (mouse) | HXB9_MOUSE |
| UniProt AC (human) | P17482 (TFClass) |
| UniProt AC (mouse) | P20615 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | HXB9.H12INVIVO.1.M.D.pcm |
| PWM | HXB9.H12INVIVO.1.M.D.pwm |
| PFM | HXB9.H12INVIVO.1.M.D.pfm |
| Alignment | HXB9.H12INVIVO.1.M.D.words.tsv |
| Threshold to P-value map | HXB9.H12INVIVO.1.M.D.thr |
| Motif in other formats | |
| JASPAR format | HXB9.H12INVIVO.1.M.D_jaspar_format.txt |
| MEME format | HXB9.H12INVIVO.1.M.D_meme_format.meme |
| Transfac format | HXB9.H12INVIVO.1.M.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1612.25 | 1550.25 | 1442.25 | 2346.25 |
| 02 | 735.75 | 267.75 | 698.75 | 5248.75 |
| 03 | 16.0 | 58.0 | 55.0 | 6822.0 |
| 04 | 3090.0 | 21.0 | 26.0 | 3814.0 |
| 05 | 6950.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 5340.0 | 11.0 | 1600.0 |
| 07 | 0.0 | 2.0 | 6944.0 | 5.0 |
| 08 | 5953.0 | 123.0 | 614.0 | 261.0 |
| 09 | 73.0 | 3941.0 | 807.0 | 2130.0 |
| 10 | 1205.75 | 2422.75 | 2236.75 | 1085.75 |
| 11 | 1698.25 | 1485.25 | 1280.25 | 2487.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.232 | 0.223 | 0.207 | 0.338 |
| 02 | 0.106 | 0.039 | 0.101 | 0.755 |
| 03 | 0.002 | 0.008 | 0.008 | 0.981 |
| 04 | 0.445 | 0.003 | 0.004 | 0.549 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.768 | 0.002 | 0.23 |
| 07 | 0.0 | 0.0 | 0.999 | 0.001 |
| 08 | 0.856 | 0.018 | 0.088 | 0.038 |
| 09 | 0.011 | 0.567 | 0.116 | 0.306 |
| 10 | 0.173 | 0.349 | 0.322 | 0.156 |
| 11 | 0.244 | 0.214 | 0.184 | 0.358 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.075 | -0.114 | -0.186 | 0.3 |
| 02 | -0.858 | -1.863 | -0.909 | 1.105 |
| 03 | -4.56 | -3.364 | -3.415 | 1.367 |
| 04 | 0.575 | -4.317 | -4.122 | 0.785 |
| 05 | 1.385 | -6.668 | -6.295 | -6.668 |
| 06 | -6.668 | 1.122 | -4.881 | -0.082 |
| 07 | -6.668 | -6.024 | 1.384 | -5.486 |
| 08 | 1.23 | -2.632 | -1.038 | -1.889 |
| 09 | -3.141 | 0.818 | -0.766 | 0.203 |
| 10 | -0.365 | 0.332 | 0.252 | -0.47 |
| 11 | -0.023 | -0.157 | -0.305 | 0.358 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.52486 |
| 0.0005 | 5.66088 |
| 0.0001 | 7.633705 |