| Motif | HXB9.H12INVIVO.0.S.D |
| Gene (human) | HOXB9 (GeneCards) |
| Gene synonyms (human) | HOX2E |
| Gene (mouse) | Hoxb9 |
| Gene synonyms (mouse) | Hox-2.5, Hoxb-9 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXB9.H12INVIVO.0.S.D |
| Gene (human) | HOXB9 (GeneCards) |
| Gene synonyms (human) | HOX2E |
| Gene (mouse) | Hoxb9 |
| Gene synonyms (mouse) | Hox-2.5, Hoxb-9 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | dTTWATGRbn |
| GC content | 34.49% |
| Information content (bits; total / per base) | 9.697 / 0.97 |
| Data sources | HT-SELEX |
| Aligned words | 8055 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.909 | 0.868 | 0.833 | 0.798 | 0.733 | 0.718 |
| best | 0.936 | 0.896 | 0.898 | 0.855 | 0.809 | 0.78 | |
| Methyl HT-SELEX, 1 experiments | median | 0.936 | 0.896 | 0.898 | 0.855 | 0.809 | 0.78 |
| best | 0.936 | 0.896 | 0.898 | 0.855 | 0.809 | 0.78 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.882 | 0.84 | 0.768 | 0.741 | 0.657 | 0.657 |
| best | 0.882 | 0.84 | 0.768 | 0.741 | 0.657 | 0.657 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.2 |
| HGNC | HGNC:5120 |
| MGI | MGI:96190 |
| EntrezGene (human) | GeneID:3219 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15417 (SSTAR profile) |
| UniProt ID (human) | HXB9_HUMAN |
| UniProt ID (mouse) | HXB9_MOUSE |
| UniProt AC (human) | P17482 (TFClass) |
| UniProt AC (mouse) | P20615 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | HXB9.H12INVIVO.0.S.D.pcm |
| PWM | HXB9.H12INVIVO.0.S.D.pwm |
| PFM | HXB9.H12INVIVO.0.S.D.pfm |
| Alignment | HXB9.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | HXB9.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HXB9.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | HXB9.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | HXB9.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1517.5 | 1515.5 | 1677.5 | 3344.5 |
| 02 | 185.5 | 168.5 | 859.5 | 6841.5 |
| 03 | 0.0 | 5.0 | 15.0 | 8035.0 |
| 04 | 3395.0 | 0.0 | 28.0 | 4632.0 |
| 05 | 8055.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 2472.0 | 23.0 | 5560.0 |
| 07 | 2.0 | 29.0 | 6619.0 | 1405.0 |
| 08 | 4419.0 | 260.0 | 3012.0 | 364.0 |
| 09 | 418.75 | 4404.75 | 1788.75 | 1442.75 |
| 10 | 1554.5 | 2762.5 | 2142.5 | 1595.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.188 | 0.188 | 0.208 | 0.415 |
| 02 | 0.023 | 0.021 | 0.107 | 0.849 |
| 03 | 0.0 | 0.001 | 0.002 | 0.998 |
| 04 | 0.421 | 0.0 | 0.003 | 0.575 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.307 | 0.003 | 0.69 |
| 07 | 0.0 | 0.004 | 0.822 | 0.174 |
| 08 | 0.549 | 0.032 | 0.374 | 0.045 |
| 09 | 0.052 | 0.547 | 0.222 | 0.179 |
| 10 | 0.193 | 0.343 | 0.266 | 0.198 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.283 | -0.284 | -0.182 | 0.507 |
| 02 | -2.374 | -2.469 | -0.85 | 1.222 |
| 03 | -6.799 | -5.628 | -4.761 | 1.383 |
| 04 | 0.522 | -6.799 | -4.199 | 0.832 |
| 05 | 1.385 | -6.799 | -6.799 | -6.799 |
| 06 | -6.799 | 0.205 | -4.38 | 1.015 |
| 07 | -6.162 | -4.167 | 1.189 | -0.359 |
| 08 | 0.785 | -2.04 | 0.402 | -1.706 |
| 09 | -1.566 | 0.782 | -0.118 | -0.333 |
| 10 | -0.259 | 0.316 | 0.062 | -0.233 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.09418 |
| 0.0005 | 6.03713 |
| 0.0001 | 7.58154 |