MotifHXB9.H12CORE.1.M.C
Gene (human)HOXB9
(GeneCards)
Gene synonyms (human)HOX2E
Gene (mouse)Hoxb9
Gene synonyms (mouse)Hox-2.5, Hoxb-9
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
C
Motif length11
ConsensusnWTWACGAYvn
GC content38.36%
Information content (bits; total / per base)10.782 / 0.98
Data sourcesMethyl-HT-SELEX
Aligned words6951

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.889 0.858 0.807 0.776 0.721 0.703
best 0.939 0.914 0.875 0.842 0.789 0.763
Methyl HT-SELEX, 1 experiments median 0.939 0.914 0.875 0.842 0.789 0.763
best 0.939 0.914 0.875 0.842 0.789 0.763
Non-Methyl HT-SELEX, 1 experiments median 0.84 0.802 0.738 0.709 0.654 0.643
best 0.84 0.802 0.738 0.709 0.654 0.643
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.2
HGNCHGNC:5120
MGIMGI:96190
EntrezGene (human)GeneID:3219
(SSTAR profile)
EntrezGene (mouse)GeneID:15417
(SSTAR profile)
UniProt ID (human)HXB9_HUMAN
UniProt ID (mouse)HXB9_MOUSE
UniProt AC (human)P17482
(TFClass)
UniProt AC (mouse)P20615
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011612.251550.251442.252346.25
02735.75267.75698.755248.75
0316.058.055.06822.0
043090.021.026.03814.0
056950.00.01.00.0
060.05340.011.01600.0
070.02.06944.05.0
085953.0123.0614.0261.0
0973.03941.0807.02130.0
101205.752422.752236.751085.75
111698.251485.251280.252487.25
PFM
ACGT
010.2320.2230.2070.338
020.1060.0390.1010.755
030.0020.0080.0080.981
040.4450.0030.0040.549
051.00.00.00.0
060.00.7680.0020.23
070.00.00.9990.001
080.8560.0180.0880.038
090.0110.5670.1160.306
100.1730.3490.3220.156
110.2440.2140.1840.358
PWM
ACGT
01-0.075-0.114-0.1860.3
02-0.858-1.863-0.9091.105
03-4.56-3.364-3.4151.367
040.575-4.317-4.1220.785
051.385-6.668-6.295-6.668
06-6.6681.122-4.881-0.082
07-6.668-6.0241.384-5.486
081.23-2.632-1.038-1.889
09-3.1410.818-0.7660.203
10-0.3650.3320.252-0.47
11-0.023-0.157-0.3050.358
Standard thresholds
P-value Threshold
0.001 4.52486
0.0005 5.66088
0.0001 7.633705