MotifHXB9.H12CORE.0.S.C
Gene (human)HOXB9
(GeneCards)
Gene synonyms (human)HOX2E
Gene (mouse)Hoxb9
Gene synonyms (mouse)Hox-2.5, Hoxb-9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
C
Motif length10
ConsensusdTTWATGRbn
GC content34.49%
Information content (bits; total / per base)9.697 / 0.97
Data sourcesHT-SELEX
Aligned words8055

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.909 0.868 0.833 0.798 0.733 0.718
best 0.936 0.896 0.898 0.855 0.809 0.78
Methyl HT-SELEX, 1 experiments median 0.936 0.896 0.898 0.855 0.809 0.78
best 0.936 0.896 0.898 0.855 0.809 0.78
Non-Methyl HT-SELEX, 1 experiments median 0.882 0.84 0.768 0.741 0.657 0.657
best 0.882 0.84 0.768 0.741 0.657 0.657
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.2
HGNCHGNC:5120
MGIMGI:96190
EntrezGene (human)GeneID:3219
(SSTAR profile)
EntrezGene (mouse)GeneID:15417
(SSTAR profile)
UniProt ID (human)HXB9_HUMAN
UniProt ID (mouse)HXB9_MOUSE
UniProt AC (human)P17482
(TFClass)
UniProt AC (mouse)P20615
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
011517.51515.51677.53344.5
02185.5168.5859.56841.5
030.05.015.08035.0
043395.00.028.04632.0
058055.00.00.00.0
060.02472.023.05560.0
072.029.06619.01405.0
084419.0260.03012.0364.0
09418.754404.751788.751442.75
101554.52762.52142.51595.5
PFM
ACGT
010.1880.1880.2080.415
020.0230.0210.1070.849
030.00.0010.0020.998
040.4210.00.0030.575
051.00.00.00.0
060.00.3070.0030.69
070.00.0040.8220.174
080.5490.0320.3740.045
090.0520.5470.2220.179
100.1930.3430.2660.198
PWM
ACGT
01-0.283-0.284-0.1820.507
02-2.374-2.469-0.851.222
03-6.799-5.628-4.7611.383
040.522-6.799-4.1990.832
051.385-6.799-6.799-6.799
06-6.7990.205-4.381.015
07-6.162-4.1671.189-0.359
080.785-2.040.402-1.706
09-1.5660.782-0.118-0.333
10-0.2590.3160.062-0.233
Standard thresholds
P-value Threshold
0.001 5.09418
0.0005 6.03713
0.0001 7.58154