| Motif | HXB4.H12RSNP.0.P.D |
| Gene (human) | HOXB4 (GeneCards) |
| Gene synonyms (human) | HOX2F |
| Gene (mouse) | Hoxb4 |
| Gene synonyms (mouse) | Hox-2.6, Hoxb-4 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXB4.H12RSNP.0.P.D |
| Gene (human) | HOXB4 (GeneCards) |
| Gene synonyms (human) | HOX2F |
| Gene (mouse) | Hoxb4 |
| Gene synonyms (mouse) | Hox-2.6, Hoxb-4 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | TGAYKRATK |
| GC content | 33.01% |
| Information content (bits; total / per base) | 8.922 / 0.991 |
| Data sources | ChIP-Seq |
| Aligned words | 1000 |
| ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mouse | 3 (21) | 0.742 | 0.802 | 0.638 | 0.727 | 0.739 | 0.789 | 2.343 | 2.902 | 223.959 | 311.076 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.75 | 0.681 | 0.688 | 0.642 | 0.625 | 0.603 |
| best | 0.813 | 0.732 | 0.761 | 0.697 | 0.694 | 0.652 | |
| Methyl HT-SELEX, 1 experiments | median | 0.687 | 0.63 | 0.615 | 0.588 | 0.557 | 0.555 |
| best | 0.687 | 0.63 | 0.615 | 0.588 | 0.557 | 0.555 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.813 | 0.732 | 0.761 | 0.697 | 0.694 | 0.652 |
| best | 0.813 | 0.732 | 0.761 | 0.697 | 0.694 | 0.652 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX4 {3.1.1.4} (TFClass) |
| TFClass ID | TFClass: 3.1.1.4.2 |
| HGNC | HGNC:5115 |
| MGI | MGI:96185 |
| EntrezGene (human) | GeneID:3214 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15412 (SSTAR profile) |
| UniProt ID (human) | HXB4_HUMAN |
| UniProt ID (mouse) | HXB4_MOUSE |
| UniProt AC (human) | P17483 (TFClass) |
| UniProt AC (mouse) | P10284 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 3 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | HXB4.H12RSNP.0.P.D.pcm |
| PWM | HXB4.H12RSNP.0.P.D.pwm |
| PFM | HXB4.H12RSNP.0.P.D.pfm |
| Alignment | HXB4.H12RSNP.0.P.D.words.tsv |
| Threshold to P-value map | HXB4.H12RSNP.0.P.D.thr |
| Motif in other formats | |
| JASPAR format | HXB4.H12RSNP.0.P.D_jaspar_format.txt |
| MEME format | HXB4.H12RSNP.0.P.D_meme_format.meme |
| Transfac format | HXB4.H12RSNP.0.P.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 91.0 | 7.0 | 25.0 | 877.0 |
| 02 | 218.0 | 9.0 | 760.0 | 13.0 |
| 03 | 934.0 | 48.0 | 14.0 | 4.0 |
| 04 | 18.0 | 166.0 | 60.0 | 756.0 |
| 05 | 156.0 | 9.0 | 300.0 | 535.0 |
| 06 | 419.0 | 22.0 | 511.0 | 48.0 |
| 07 | 720.0 | 270.0 | 5.0 | 5.0 |
| 08 | 44.0 | 39.0 | 32.0 | 885.0 |
| 09 | 101.0 | 81.0 | 613.0 | 205.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.091 | 0.007 | 0.025 | 0.877 |
| 02 | 0.218 | 0.009 | 0.76 | 0.013 |
| 03 | 0.934 | 0.048 | 0.014 | 0.004 |
| 04 | 0.018 | 0.166 | 0.06 | 0.756 |
| 05 | 0.156 | 0.009 | 0.3 | 0.535 |
| 06 | 0.419 | 0.022 | 0.511 | 0.048 |
| 07 | 0.72 | 0.27 | 0.005 | 0.005 |
| 08 | 0.044 | 0.039 | 0.032 | 0.885 |
| 09 | 0.101 | 0.081 | 0.613 | 0.205 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.999 | -3.362 | -2.243 | 1.25 |
| 02 | -0.136 | -3.156 | 1.107 | -2.839 |
| 03 | 1.313 | -1.622 | -2.773 | -3.783 |
| 04 | -2.546 | -0.406 | -1.406 | 1.102 |
| 05 | -0.467 | -3.156 | 0.181 | 0.757 |
| 06 | 0.514 | -2.362 | 0.711 | -1.622 |
| 07 | 1.053 | 0.076 | -3.622 | -3.622 |
| 08 | -1.706 | -1.821 | -2.01 | 1.259 |
| 09 | -0.896 | -1.113 | 0.893 | -0.197 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.92948 |
| 0.0005 | 5.737735 |
| 0.0001 | 7.23583 |