| Motif | HXB3.H12INVIVO.0.S.D |
| Gene (human) | HOXB3 (GeneCards) |
| Gene synonyms (human) | HOX2G |
| Gene (mouse) | Hoxb3 |
| Gene synonyms (mouse) | Hox-2.7, Hoxb-3 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXB3.H12INVIVO.0.S.D |
| Gene (human) | HOXB3 (GeneCards) |
| Gene synonyms (human) | HOX2G |
| Gene (mouse) | Hoxb3 |
| Gene synonyms (mouse) | Hox-2.7, Hoxb-3 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 9 |
| Consensus | nbTAATKdn |
| GC content | 27.88% |
| Information content (bits; total / per base) | 8.689 / 0.965 |
| Data sources | HT-SELEX |
| Aligned words | 9605 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Non-Methyl HT-SELEX, 2 experiments | median | 0.869 | 0.829 | 0.794 | 0.763 | 0.702 | 0.688 |
| best | 0.951 | 0.926 | 0.897 | 0.867 | 0.78 | 0.768 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX3 {3.1.1.3} (TFClass) |
| TFClass ID | TFClass: 3.1.1.3.2 |
| HGNC | HGNC:5114 |
| MGI | MGI:96184 |
| EntrezGene (human) | GeneID:3213 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15410 (SSTAR profile) |
| UniProt ID (human) | HXB3_HUMAN |
| UniProt ID (mouse) | HXB3_MOUSE |
| UniProt AC (human) | P14651 (TFClass) |
| UniProt AC (mouse) | P09026 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 2 |
| Methyl-HT-SELEX | 0 |
| PCM | HXB3.H12INVIVO.0.S.D.pcm |
| PWM | HXB3.H12INVIVO.0.S.D.pwm |
| PFM | HXB3.H12INVIVO.0.S.D.pfm |
| Alignment | HXB3.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | HXB3.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HXB3.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | HXB3.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | HXB3.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2919.25 | 2232.25 | 2694.25 | 1759.25 |
| 02 | 959.75 | 3855.75 | 1539.75 | 3249.75 |
| 03 | 58.0 | 82.0 | 107.0 | 9358.0 |
| 04 | 9605.0 | 0.0 | 0.0 | 0.0 |
| 05 | 9604.0 | 0.0 | 1.0 | 0.0 |
| 06 | 0.0 | 52.0 | 10.0 | 9543.0 |
| 07 | 274.0 | 504.0 | 4501.0 | 4326.0 |
| 08 | 4176.75 | 1333.75 | 2457.75 | 1636.75 |
| 09 | 2167.25 | 2541.25 | 2185.25 | 2711.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.304 | 0.232 | 0.281 | 0.183 |
| 02 | 0.1 | 0.401 | 0.16 | 0.338 |
| 03 | 0.006 | 0.009 | 0.011 | 0.974 |
| 04 | 1.0 | 0.0 | 0.0 | 0.0 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.005 | 0.001 | 0.994 |
| 07 | 0.029 | 0.052 | 0.469 | 0.45 |
| 08 | 0.435 | 0.139 | 0.256 | 0.17 |
| 09 | 0.226 | 0.265 | 0.228 | 0.282 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.195 | -0.073 | 0.115 | -0.311 |
| 02 | -0.916 | 0.473 | -0.444 | 0.302 |
| 03 | -3.685 | -3.35 | -3.091 | 1.36 |
| 04 | 1.386 | -6.955 | -6.955 | -6.955 |
| 05 | 1.385 | -6.955 | -6.593 | -6.955 |
| 06 | -6.955 | -3.79 | -5.276 | 1.379 |
| 07 | -2.163 | -1.558 | 0.628 | 0.588 |
| 08 | 0.553 | -0.587 | 0.023 | -0.383 |
| 09 | -0.102 | 0.057 | -0.094 | 0.121 |
| P-value | Threshold |
|---|---|
| 0.001 | 5.84602 |
| 0.0005 | 6.337745 |
| 0.0001 | 7.118495 |