MotifHXB3.H12INVITRO.0.S.B
Gene (human)HOXB3
(GeneCards)
Gene synonyms (human)HOX2G
Gene (mouse)Hoxb3
Gene synonyms (mouse)Hox-2.7, Hoxb-3
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length9
ConsensusnbTAATKdn
GC content27.88%
Information content (bits; total / per base)8.689 / 0.965
Data sourcesHT-SELEX
Aligned words9605

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Non-Methyl HT-SELEX, 2 experiments median 0.869 0.829 0.794 0.763 0.702 0.688
best 0.951 0.926 0.897 0.867 0.78 0.768
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX3 {3.1.1.3} (TFClass)
TFClass IDTFClass: 3.1.1.3.2
HGNCHGNC:5114
MGIMGI:96184
EntrezGene (human)GeneID:3213
(SSTAR profile)
EntrezGene (mouse)GeneID:15410
(SSTAR profile)
UniProt ID (human)HXB3_HUMAN
UniProt ID (mouse)HXB3_MOUSE
UniProt AC (human)P14651
(TFClass)
UniProt AC (mouse)P09026
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 2
Methyl-HT-SELEX 0
PCM
ACGT
012919.252232.252694.251759.25
02959.753855.751539.753249.75
0358.082.0107.09358.0
049605.00.00.00.0
059604.00.01.00.0
060.052.010.09543.0
07274.0504.04501.04326.0
084176.751333.752457.751636.75
092167.252541.252185.252711.25
PFM
ACGT
010.3040.2320.2810.183
020.10.4010.160.338
030.0060.0090.0110.974
041.00.00.00.0
051.00.00.00.0
060.00.0050.0010.994
070.0290.0520.4690.45
080.4350.1390.2560.17
090.2260.2650.2280.282
PWM
ACGT
010.195-0.0730.115-0.311
02-0.9160.473-0.4440.302
03-3.685-3.35-3.0911.36
041.386-6.955-6.955-6.955
051.385-6.955-6.593-6.955
06-6.955-3.79-5.2761.379
07-2.163-1.5580.6280.588
080.553-0.5870.023-0.383
09-0.1020.057-0.0940.121
Standard thresholds
P-value Threshold
0.001 5.84602
0.0005 6.337745
0.0001 7.118495