Motif | HXB1.H12CORE.0.SM.B |
Gene (human) | HOXB1 (GeneCards) |
Gene synonyms (human) | HOX2I |
Gene (mouse) | Hoxb1 |
Gene synonyms (mouse) | Hox-2.9, Hoxb-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXB1.H12CORE.0.SM.B |
Gene (human) | HOXB1 (GeneCards) |
Gene synonyms (human) | HOX2I |
Gene (mouse) | Hoxb1 |
Gene synonyms (mouse) | Hox-2.9, Hoxb-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | nnvYTAATYAvn |
GC content | 34.7% |
Information content (bits; total / per base) | 11.153 / 0.929 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 7459 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.938 | 0.903 | 0.903 | 0.863 | 0.836 | 0.803 |
best | 0.954 | 0.926 | 0.934 | 0.899 | 0.891 | 0.854 | |
Methyl HT-SELEX, 1 experiments | median | 0.921 | 0.879 | 0.872 | 0.827 | 0.782 | 0.752 |
best | 0.921 | 0.879 | 0.872 | 0.827 | 0.782 | 0.752 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.954 | 0.926 | 0.934 | 0.899 | 0.891 | 0.854 |
best | 0.954 | 0.926 | 0.934 | 0.899 | 0.891 | 0.854 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX1 {3.1.1.1} (TFClass) |
TFClass ID | TFClass: 3.1.1.1.2 |
HGNC | HGNC:5111 |
MGI | MGI:96182 |
EntrezGene (human) | GeneID:3211 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15407 (SSTAR profile) |
UniProt ID (human) | HXB1_HUMAN |
UniProt ID (mouse) | HXB1_MOUSE |
UniProt AC (human) | P14653 (TFClass) |
UniProt AC (mouse) | P17919 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXB1.H12CORE.0.SM.B.pcm |
PWM | HXB1.H12CORE.0.SM.B.pwm |
PFM | HXB1.H12CORE.0.SM.B.pfm |
Alignment | HXB1.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXB1.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXB1.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXB1.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXB1.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1683.0 | 1716.0 | 1757.0 | 2303.0 |
02 | 1517.0 | 2515.0 | 2169.0 | 1258.0 |
03 | 1559.0 | 2270.0 | 3416.0 | 214.0 |
04 | 8.0 | 3155.0 | 1536.0 | 2760.0 |
05 | 0.0 | 0.0 | 0.0 | 7459.0 |
06 | 7459.0 | 0.0 | 0.0 | 0.0 |
07 | 7459.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 7459.0 |
09 | 0.0 | 1020.0 | 841.0 | 5598.0 |
10 | 5798.0 | 24.0 | 1609.0 | 28.0 |
11 | 1161.25 | 3130.25 | 2182.25 | 985.25 |
12 | 1695.5 | 1914.5 | 1800.5 | 2048.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.226 | 0.23 | 0.236 | 0.309 |
02 | 0.203 | 0.337 | 0.291 | 0.169 |
03 | 0.209 | 0.304 | 0.458 | 0.029 |
04 | 0.001 | 0.423 | 0.206 | 0.37 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.137 | 0.113 | 0.751 |
10 | 0.777 | 0.003 | 0.216 | 0.004 |
11 | 0.156 | 0.42 | 0.293 | 0.132 |
12 | 0.227 | 0.257 | 0.241 | 0.275 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.102 | -0.083 | -0.059 | 0.211 |
02 | -0.206 | 0.299 | 0.151 | -0.393 |
03 | -0.179 | 0.196 | 0.605 | -2.156 |
04 | -5.207 | 0.525 | -0.194 | 0.392 |
05 | -6.73 | -6.73 | -6.73 | 1.385 |
06 | 1.385 | -6.73 | -6.73 | -6.73 |
07 | 1.385 | -6.73 | -6.73 | -6.73 |
08 | -6.73 | -6.73 | -6.73 | 1.385 |
09 | -6.73 | -0.602 | -0.795 | 1.098 |
10 | 1.134 | -4.265 | -0.147 | -4.123 |
11 | -0.473 | 0.518 | 0.157 | -0.637 |
12 | -0.095 | 0.026 | -0.035 | 0.094 |
P-value | Threshold |
---|---|
0.001 | 3.66915 |
0.0005 | 5.875245 |
0.0001 | 7.82252 |