MotifHXA9.H12INVIVO.0.P.B
Gene (human)HOXA9
(GeneCards)
Gene synonyms (human)HOX1G
Gene (mouse)Hoxa9
Gene synonyms (mouse)Hox-1.7, Hoxa-9
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length12
ConsensusdWRATTKATKdb
GC content31.13%
Information content (bits; total / per base)10.77 / 0.897
Data sourcesChIP-Seq
Aligned words1000

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (24) 0.764 0.85 0.561 0.772 0.776 0.85 2.111 3.203 14.232 242.62
Mouse 5 (32) 0.755 0.904 0.64 0.843 0.72 0.888 2.194 3.533 109.431 233.921

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.786 0.712 0.748 0.682 0.702 0.65
best 0.804 0.73 0.766 0.699 0.718 0.665
Methyl HT-SELEX, 1 experiments median 0.804 0.73 0.766 0.699 0.718 0.665
best 0.804 0.73 0.766 0.699 0.718 0.665
Non-Methyl HT-SELEX, 1 experiments median 0.768 0.695 0.73 0.666 0.686 0.636
best 0.768 0.695 0.73 0.666 0.686 0.636
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.1
HGNCHGNC:5109
MGIMGI:96180
EntrezGene (human)GeneID:3205
(SSTAR profile)
EntrezGene (mouse)GeneID:15405
(SSTAR profile)
UniProt ID (human)HXA9_HUMAN
UniProt ID (mouse)HXA9_MOUSE
UniProt AC (human)P31269
(TFClass)
UniProt AC (mouse)P09631
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 5 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
01404.0132.0273.0191.0
02221.018.079.0682.0
03150.017.0771.062.0
04827.025.018.0130.0
0528.015.049.0908.0
0626.010.048.0916.0
0779.080.0169.0672.0
08973.014.013.00.0
0910.0112.021.0857.0
10145.08.0572.0275.0
11296.049.0512.0143.0
1276.0522.0209.0193.0
PFM
ACGT
010.4040.1320.2730.191
020.2210.0180.0790.682
030.150.0170.7710.062
040.8270.0250.0180.13
050.0280.0150.0490.908
060.0260.010.0480.916
070.0790.080.1690.672
080.9730.0140.0130.0
090.010.1120.0210.857
100.1450.0080.5720.275
110.2960.0490.5120.143
120.0760.5220.2090.193
PWM
ACGT
010.477-0.6330.087-0.267
02-0.122-2.546-1.1370.999
03-0.506-2.5981.122-1.374
041.192-2.243-2.546-0.648
05-2.136-2.711-1.6021.285
06-2.206-3.066-1.6221.294
07-1.137-1.125-0.3880.984
081.354-2.773-2.839-4.982
09-3.066-0.795-2.4051.227
10-0.54-3.2530.8240.095
110.168-1.6020.713-0.553
12-1.1750.733-0.178-0.257
Standard thresholds
P-value Threshold
0.001 4.54731
0.0005 5.428115
0.0001 7.246135