MotifHXA9.H12INVITRO.2.P.B
Gene (human)HOXA9
(GeneCards)
Gene synonyms (human)HOX1G
Gene (mouse)Hoxa9
Gene synonyms (mouse)Hox-1.7, Hoxa-9
LOGO
LOGO (reverse complement)
Motif subtype2
Quality
B
Motif length10
ConsensusYTTTATKRSn
GC content29.24%
Information content (bits; total / per base)11.466 / 1.147
Data sourcesChIP-Seq
Aligned words998

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Human 4 (24) 0.778 0.833 0.624 0.71 0.819 0.872 2.434 2.889 25.209 58.553
Mouse 5 (32) 0.55 0.76 0.392 0.626 0.519 0.746 1.172 2.156 16.659 73.036

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.883 0.825 0.848 0.789 0.797 0.744
best 0.9 0.847 0.868 0.811 0.817 0.765
Methyl HT-SELEX, 1 experiments median 0.9 0.847 0.868 0.811 0.817 0.765
best 0.9 0.847 0.868 0.811 0.817 0.765
Non-Methyl HT-SELEX, 1 experiments median 0.866 0.804 0.829 0.767 0.777 0.723
best 0.866 0.804 0.829 0.767 0.777 0.723
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.1
HGNCHGNC:5109
MGIMGI:96180
EntrezGene (human)GeneID:3205
(SSTAR profile)
EntrezGene (mouse)GeneID:15405
(SSTAR profile)
UniProt ID (human)HXA9_HUMAN
UniProt ID (mouse)HXA9_MOUSE
UniProt AC (human)P31269
(TFClass)
UniProt AC (mouse)P09631
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 4 human, 5 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
0175.0115.071.0737.0
026.07.022.0963.0
038.015.04.0971.0
0472.025.028.0873.0
05982.07.07.02.0
0612.051.031.0904.0
0792.05.0466.0435.0
08167.016.0736.079.0
0930.0724.0182.062.0
10209.0383.023.0383.0
PFM
ACGT
010.0750.1150.0710.738
020.0060.0070.0220.965
030.0080.0150.0040.973
040.0720.0250.0280.875
050.9840.0070.0070.002
060.0120.0510.0310.906
070.0920.0050.4670.436
080.1670.0160.7370.079
090.030.7250.1820.062
100.2090.3840.0230.384
PWM
ACGT
01-1.186-0.767-1.241.079
02-3.482-3.36-2.361.345
03-3.252-2.709-3.7811.354
04-1.226-2.241-2.1341.248
051.365-3.36-3.36-4.211
06-2.907-1.561-2.0381.282
07-0.986-3.620.6220.553
08-0.398-2.6511.077-1.135
09-2.0691.061-0.313-1.372
10-0.1760.426-2.3180.426
Standard thresholds
P-value Threshold
0.001 4.29423
0.0005 5.28398
0.0001 7.21563