Motif | HXA9.H12CORE.1.SM.B |
Gene (human) | HOXA9 (GeneCards) |
Gene synonyms (human) | HOX1G |
Gene (mouse) | Hoxa9 |
Gene synonyms (mouse) | Hox-1.7, Hoxa-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | HXA9.H12CORE.1.SM.B |
Gene (human) | HOXA9 (GeneCards) |
Gene synonyms (human) | HOX1G |
Gene (mouse) | Hoxa9 |
Gene synonyms (mouse) | Hox-1.7, Hoxa-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 11 |
Consensus | nKTAATGRSvn |
GC content | 41.07% |
Information content (bits; total / per base) | 9.914 / 0.901 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8730 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 4 (24) | 0.74 | 0.813 | 0.544 | 0.651 | 0.677 | 0.742 | 1.522 | 1.787 | 18.808 | 40.252 |
Mouse | 5 (32) | 0.598 | 0.771 | 0.425 | 0.596 | 0.494 | 0.67 | 1.019 | 1.558 | 16.305 | 68.77 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.929 | 0.883 | 0.912 | 0.863 | 0.883 | 0.833 |
best | 0.944 | 0.905 | 0.929 | 0.886 | 0.905 | 0.859 | |
Methyl HT-SELEX, 1 experiments | median | 0.944 | 0.905 | 0.929 | 0.886 | 0.905 | 0.859 |
best | 0.944 | 0.905 | 0.929 | 0.886 | 0.905 | 0.859 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.914 | 0.861 | 0.896 | 0.84 | 0.862 | 0.807 |
best | 0.914 | 0.861 | 0.896 | 0.84 | 0.862 | 0.807 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.1 |
HGNC | HGNC:5109 |
MGI | MGI:96180 |
EntrezGene (human) | GeneID:3205 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15405 (SSTAR profile) |
UniProt ID (human) | HXA9_HUMAN |
UniProt ID (mouse) | HXA9_MOUSE |
UniProt AC (human) | P31269 (TFClass) |
UniProt AC (mouse) | P09631 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 4 human, 5 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXA9.H12CORE.1.SM.B.pcm |
PWM | HXA9.H12CORE.1.SM.B.pwm |
PFM | HXA9.H12CORE.1.SM.B.pfm |
Alignment | HXA9.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | HXA9.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | HXA9.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | HXA9.H12CORE.1.SM.B_meme_format.meme |
Transfac format | HXA9.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1907.25 | 2450.25 | 2865.25 | 1507.25 |
02 | 753.0 | 244.0 | 1763.0 | 5970.0 |
03 | 24.0 | 1.0 | 0.0 | 8705.0 |
04 | 6467.0 | 0.0 | 4.0 | 2259.0 |
05 | 8730.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 3681.0 | 0.0 | 5049.0 |
07 | 7.0 | 12.0 | 8306.0 | 405.0 |
08 | 5218.0 | 42.0 | 3028.0 | 442.0 |
09 | 202.0 | 4633.0 | 2035.0 | 1860.0 |
10 | 1448.0 | 3324.0 | 2610.0 | 1348.0 |
11 | 2180.5 | 2372.5 | 2072.5 | 2104.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.218 | 0.281 | 0.328 | 0.173 |
02 | 0.086 | 0.028 | 0.202 | 0.684 |
03 | 0.003 | 0.0 | 0.0 | 0.997 |
04 | 0.741 | 0.0 | 0.0 | 0.259 |
05 | 1.0 | 0.0 | 0.0 | 0.0 |
06 | 0.0 | 0.422 | 0.0 | 0.578 |
07 | 0.001 | 0.001 | 0.951 | 0.046 |
08 | 0.598 | 0.005 | 0.347 | 0.051 |
09 | 0.023 | 0.531 | 0.233 | 0.213 |
10 | 0.166 | 0.381 | 0.299 | 0.154 |
11 | 0.25 | 0.272 | 0.237 | 0.241 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.135 | 0.116 | 0.272 | -0.37 |
02 | -1.062 | -2.183 | -0.213 | 1.006 |
03 | -4.421 | -6.505 | -6.87 | 1.383 |
04 | 1.086 | -6.87 | -5.854 | 0.034 |
05 | 1.386 | -6.87 | -6.87 | -6.87 |
06 | -6.87 | 0.522 | -6.87 | 0.838 |
07 | -5.463 | -5.031 | 1.336 | -1.68 |
08 | 0.871 | -3.899 | 0.327 | -1.593 |
09 | -2.37 | 0.752 | -0.07 | -0.16 |
10 | -0.41 | 0.42 | 0.179 | -0.481 |
11 | -0.001 | 0.083 | -0.052 | -0.036 |
P-value | Threshold |
---|---|
0.001 | 5.069335 |
0.0005 | 6.08659 |
0.0001 | 7.6069 |