Motif | HXA9.H12CORE.0.P.B |
Gene (human) | HOXA9 (GeneCards) |
Gene synonyms (human) | HOX1G |
Gene (mouse) | Hoxa9 |
Gene synonyms (mouse) | Hox-1.7, Hoxa-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXA9.H12CORE.0.P.B |
Gene (human) | HOXA9 (GeneCards) |
Gene synonyms (human) | HOX1G |
Gene (mouse) | Hoxa9 |
Gene synonyms (mouse) | Hox-1.7, Hoxa-9 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | dWRATTKATKdb |
GC content | 31.13% |
Information content (bits; total / per base) | 10.77 / 0.897 |
Data sources | ChIP-Seq |
Aligned words | 1000 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Human | 4 (24) | 0.764 | 0.85 | 0.561 | 0.772 | 0.776 | 0.85 | 2.111 | 3.203 | 14.232 | 242.62 |
Mouse | 5 (32) | 0.755 | 0.904 | 0.64 | 0.843 | 0.72 | 0.888 | 2.194 | 3.533 | 109.431 | 233.921 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.786 | 0.712 | 0.748 | 0.682 | 0.702 | 0.65 |
best | 0.804 | 0.73 | 0.766 | 0.699 | 0.718 | 0.665 | |
Methyl HT-SELEX, 1 experiments | median | 0.804 | 0.73 | 0.766 | 0.699 | 0.718 | 0.665 |
best | 0.804 | 0.73 | 0.766 | 0.699 | 0.718 | 0.665 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.768 | 0.695 | 0.73 | 0.666 | 0.686 | 0.636 |
best | 0.768 | 0.695 | 0.73 | 0.666 | 0.686 | 0.636 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.1 |
HGNC | HGNC:5109 |
MGI | MGI:96180 |
EntrezGene (human) | GeneID:3205 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15405 (SSTAR profile) |
UniProt ID (human) | HXA9_HUMAN |
UniProt ID (mouse) | HXA9_MOUSE |
UniProt AC (human) | P31269 (TFClass) |
UniProt AC (mouse) | P09631 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 4 human, 5 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXA9.H12CORE.0.P.B.pcm |
PWM | HXA9.H12CORE.0.P.B.pwm |
PFM | HXA9.H12CORE.0.P.B.pfm |
Alignment | HXA9.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | HXA9.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | HXA9.H12CORE.0.P.B_jaspar_format.txt |
MEME format | HXA9.H12CORE.0.P.B_meme_format.meme |
Transfac format | HXA9.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 404.0 | 132.0 | 273.0 | 191.0 |
02 | 221.0 | 18.0 | 79.0 | 682.0 |
03 | 150.0 | 17.0 | 771.0 | 62.0 |
04 | 827.0 | 25.0 | 18.0 | 130.0 |
05 | 28.0 | 15.0 | 49.0 | 908.0 |
06 | 26.0 | 10.0 | 48.0 | 916.0 |
07 | 79.0 | 80.0 | 169.0 | 672.0 |
08 | 973.0 | 14.0 | 13.0 | 0.0 |
09 | 10.0 | 112.0 | 21.0 | 857.0 |
10 | 145.0 | 8.0 | 572.0 | 275.0 |
11 | 296.0 | 49.0 | 512.0 | 143.0 |
12 | 76.0 | 522.0 | 209.0 | 193.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.404 | 0.132 | 0.273 | 0.191 |
02 | 0.221 | 0.018 | 0.079 | 0.682 |
03 | 0.15 | 0.017 | 0.771 | 0.062 |
04 | 0.827 | 0.025 | 0.018 | 0.13 |
05 | 0.028 | 0.015 | 0.049 | 0.908 |
06 | 0.026 | 0.01 | 0.048 | 0.916 |
07 | 0.079 | 0.08 | 0.169 | 0.672 |
08 | 0.973 | 0.014 | 0.013 | 0.0 |
09 | 0.01 | 0.112 | 0.021 | 0.857 |
10 | 0.145 | 0.008 | 0.572 | 0.275 |
11 | 0.296 | 0.049 | 0.512 | 0.143 |
12 | 0.076 | 0.522 | 0.209 | 0.193 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.477 | -0.633 | 0.087 | -0.267 |
02 | -0.122 | -2.546 | -1.137 | 0.999 |
03 | -0.506 | -2.598 | 1.122 | -1.374 |
04 | 1.192 | -2.243 | -2.546 | -0.648 |
05 | -2.136 | -2.711 | -1.602 | 1.285 |
06 | -2.206 | -3.066 | -1.622 | 1.294 |
07 | -1.137 | -1.125 | -0.388 | 0.984 |
08 | 1.354 | -2.773 | -2.839 | -4.982 |
09 | -3.066 | -0.795 | -2.405 | 1.227 |
10 | -0.54 | -3.253 | 0.824 | 0.095 |
11 | 0.168 | -1.602 | 0.713 | -0.553 |
12 | -1.175 | 0.733 | -0.178 | -0.257 |
P-value | Threshold |
---|---|
0.001 | 4.54731 |
0.0005 | 5.428115 |
0.0001 | 7.246135 |