MotifHXA7.H12INVIVO.0.SM.D
Gene (human)HOXA7
(GeneCards)
Gene synonyms (human)HOX1A
Gene (mouse)Hoxa7
Gene synonyms (mouse)Hox-1.1, Hoxa-7
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
D
Motif length13
ConsensusnnvbTAATKRbnn
GC content40.03%
Information content (bits; total / per base)10.058 / 0.774
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words9116

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 2 experiments median 0.943 0.91 0.912 0.873 0.861 0.82
best 0.956 0.929 0.929 0.895 0.879 0.842
Methyl HT-SELEX, 1 experiments median 0.931 0.891 0.896 0.851 0.843 0.799
best 0.931 0.891 0.896 0.851 0.843 0.799
Non-Methyl HT-SELEX, 1 experiments median 0.956 0.929 0.929 0.895 0.879 0.842
best 0.956 0.929 0.929 0.895 0.879 0.842
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX6-7 {3.1.1.6} (TFClass)
TFClass IDTFClass: 3.1.1.6.4
HGNCHGNC:5108
MGIMGI:96179
EntrezGene (human)GeneID:3204
(SSTAR profile)
EntrezGene (mouse)GeneID:15404
(SSTAR profile)
UniProt ID (human)HXA7_HUMAN
UniProt ID (mouse)HXA7_MOUSE
UniProt AC (human)P31268
(TFClass)
UniProt AC (mouse)P02830
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 0 mouse
HT-SELEX 1
Methyl-HT-SELEX 1
PCM
ACGT
012472.02051.02546.02047.0
021858.03539.01938.01781.0
032275.02792.03315.0734.0
04930.02426.01961.03799.0
0510.017.00.09089.0
069116.00.00.00.0
079116.00.00.00.0
080.0179.00.08937.0
0982.0174.05135.03725.0
104103.0171.04454.0388.0
11771.04587.02147.01611.0
121535.03398.02234.01949.0
132290.02439.01933.02454.0
PFM
ACGT
010.2710.2250.2790.225
020.2040.3880.2130.195
030.250.3060.3640.081
040.1020.2660.2150.417
050.0010.0020.00.997
061.00.00.00.0
071.00.00.00.0
080.00.020.00.98
090.0090.0190.5630.409
100.450.0190.4890.043
110.0850.5030.2360.177
120.1680.3730.2450.214
130.2510.2680.2120.269
PWM
ACGT
010.081-0.1050.111-0.107
02-0.2040.44-0.162-0.246
03-0.0020.2030.374-1.131
04-0.8950.062-0.150.511
05-5.225-4.773-6.9091.383
061.386-6.909-6.909-6.909
071.386-6.909-6.909-6.909
08-6.909-2.532-6.9091.366
09-3.298-2.560.8120.491
100.588-2.5780.67-1.766
11-1.0820.699-0.06-0.346
12-0.3950.399-0.02-0.156
130.0050.068-0.1640.074
Standard thresholds
P-value Threshold
0.001 4.89371
0.0005 6.259365
0.0001 7.65396