Motif | HXA7.H12CORE.0.SM.B |
Gene (human) | HOXA7 (GeneCards) |
Gene synonyms (human) | HOX1A |
Gene (mouse) | Hoxa7 |
Gene synonyms (mouse) | Hox-1.1, Hoxa-7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXA7.H12CORE.0.SM.B |
Gene (human) | HOXA7 (GeneCards) |
Gene synonyms (human) | HOX1A |
Gene (mouse) | Hoxa7 |
Gene synonyms (mouse) | Hox-1.1, Hoxa-7 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nnvbTAATKRbnn |
GC content | 40.03% |
Information content (bits; total / per base) | 10.058 / 0.774 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9116 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 2 experiments | median | 0.943 | 0.91 | 0.912 | 0.873 | 0.861 | 0.82 |
best | 0.956 | 0.929 | 0.929 | 0.895 | 0.879 | 0.842 | |
Methyl HT-SELEX, 1 experiments | median | 0.931 | 0.891 | 0.896 | 0.851 | 0.843 | 0.799 |
best | 0.931 | 0.891 | 0.896 | 0.851 | 0.843 | 0.799 | |
Non-Methyl HT-SELEX, 1 experiments | median | 0.956 | 0.929 | 0.929 | 0.895 | 0.879 | 0.842 |
best | 0.956 | 0.929 | 0.929 | 0.895 | 0.879 | 0.842 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX6-7 {3.1.1.6} (TFClass) |
TFClass ID | TFClass: 3.1.1.6.4 |
HGNC | HGNC:5108 |
MGI | MGI:96179 |
EntrezGene (human) | GeneID:3204 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15404 (SSTAR profile) |
UniProt ID (human) | HXA7_HUMAN |
UniProt ID (mouse) | HXA7_MOUSE |
UniProt AC (human) | P31268 (TFClass) |
UniProt AC (mouse) | P02830 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 1 |
Methyl-HT-SELEX | 1 |
PCM | HXA7.H12CORE.0.SM.B.pcm |
PWM | HXA7.H12CORE.0.SM.B.pwm |
PFM | HXA7.H12CORE.0.SM.B.pfm |
Alignment | HXA7.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXA7.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXA7.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXA7.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXA7.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2472.0 | 2051.0 | 2546.0 | 2047.0 |
02 | 1858.0 | 3539.0 | 1938.0 | 1781.0 |
03 | 2275.0 | 2792.0 | 3315.0 | 734.0 |
04 | 930.0 | 2426.0 | 1961.0 | 3799.0 |
05 | 10.0 | 17.0 | 0.0 | 9089.0 |
06 | 9116.0 | 0.0 | 0.0 | 0.0 |
07 | 9116.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 179.0 | 0.0 | 8937.0 |
09 | 82.0 | 174.0 | 5135.0 | 3725.0 |
10 | 4103.0 | 171.0 | 4454.0 | 388.0 |
11 | 771.0 | 4587.0 | 2147.0 | 1611.0 |
12 | 1535.0 | 3398.0 | 2234.0 | 1949.0 |
13 | 2290.0 | 2439.0 | 1933.0 | 2454.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.271 | 0.225 | 0.279 | 0.225 |
02 | 0.204 | 0.388 | 0.213 | 0.195 |
03 | 0.25 | 0.306 | 0.364 | 0.081 |
04 | 0.102 | 0.266 | 0.215 | 0.417 |
05 | 0.001 | 0.002 | 0.0 | 0.997 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.02 | 0.0 | 0.98 |
09 | 0.009 | 0.019 | 0.563 | 0.409 |
10 | 0.45 | 0.019 | 0.489 | 0.043 |
11 | 0.085 | 0.503 | 0.236 | 0.177 |
12 | 0.168 | 0.373 | 0.245 | 0.214 |
13 | 0.251 | 0.268 | 0.212 | 0.269 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.081 | -0.105 | 0.111 | -0.107 |
02 | -0.204 | 0.44 | -0.162 | -0.246 |
03 | -0.002 | 0.203 | 0.374 | -1.131 |
04 | -0.895 | 0.062 | -0.15 | 0.511 |
05 | -5.225 | -4.773 | -6.909 | 1.383 |
06 | 1.386 | -6.909 | -6.909 | -6.909 |
07 | 1.386 | -6.909 | -6.909 | -6.909 |
08 | -6.909 | -2.532 | -6.909 | 1.366 |
09 | -3.298 | -2.56 | 0.812 | 0.491 |
10 | 0.588 | -2.578 | 0.67 | -1.766 |
11 | -1.082 | 0.699 | -0.06 | -0.346 |
12 | -0.395 | 0.399 | -0.02 | -0.156 |
13 | 0.005 | 0.068 | -0.164 | 0.074 |
P-value | Threshold |
---|---|
0.001 | 4.89371 |
0.0005 | 6.259365 |
0.0001 | 7.65396 |