| Motif | HXA6.H12INVIVO.0.SM.D |
| Gene (human) | HOXA6 (GeneCards) |
| Gene synonyms (human) | HOX1B |
| Gene (mouse) | Hoxa6 |
| Gene synonyms (mouse) | Hox-1.2, Hoxa-6 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXA6.H12INVIVO.0.SM.D |
| Gene (human) | HOXA6 (GeneCards) |
| Gene synonyms (human) | HOX1B |
| Gene (mouse) | Hoxa6 |
| Gene synonyms (mouse) | Hox-1.2, Hoxa-6 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nvbTAATKRbnn |
| GC content | 35.8% |
| Information content (bits; total / per base) | 10.302 / 0.859 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9530 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.896 | 0.842 | 0.853 | 0.799 | 0.788 | 0.745 |
| best | 0.91 | 0.859 | 0.881 | 0.826 | 0.832 | 0.781 | |
| Methyl HT-SELEX, 1 experiments | median | 0.882 | 0.825 | 0.826 | 0.773 | 0.744 | 0.709 |
| best | 0.882 | 0.825 | 0.826 | 0.773 | 0.744 | 0.709 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.91 | 0.859 | 0.881 | 0.826 | 0.832 | 0.781 |
| best | 0.91 | 0.859 | 0.881 | 0.826 | 0.832 | 0.781 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX6-7 {3.1.1.6} (TFClass) |
| TFClass ID | TFClass: 3.1.1.6.1 |
| HGNC | HGNC:5107 |
| MGI | MGI:96178 |
| EntrezGene (human) | GeneID:3203 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15403 (SSTAR profile) |
| UniProt ID (human) | HXA6_HUMAN |
| UniProt ID (mouse) | HXA6_MOUSE |
| UniProt AC (human) | P31267 (TFClass) |
| UniProt AC (mouse) | P09092 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | HXA6.H12INVIVO.0.SM.D.pcm |
| PWM | HXA6.H12INVIVO.0.SM.D.pwm |
| PFM | HXA6.H12INVIVO.0.SM.D.pfm |
| Alignment | HXA6.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | HXA6.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXA6.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | HXA6.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | HXA6.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2282.0 | 3019.0 | 2098.0 | 2131.0 |
| 02 | 3166.5 | 2267.5 | 2974.5 | 1121.5 |
| 03 | 1029.0 | 1817.0 | 1506.0 | 5178.0 |
| 04 | 6.0 | 8.0 | 0.0 | 9516.0 |
| 05 | 9530.0 | 0.0 | 0.0 | 0.0 |
| 06 | 9530.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 166.0 | 0.0 | 9364.0 |
| 08 | 75.0 | 152.0 | 4758.0 | 4545.0 |
| 09 | 4910.0 | 81.0 | 4249.0 | 290.0 |
| 10 | 696.0 | 5144.0 | 2293.0 | 1397.0 |
| 11 | 1528.0 | 3637.0 | 2083.0 | 2282.0 |
| 12 | 2403.5 | 2679.5 | 2010.5 | 2436.5 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.239 | 0.317 | 0.22 | 0.224 |
| 02 | 0.332 | 0.238 | 0.312 | 0.118 |
| 03 | 0.108 | 0.191 | 0.158 | 0.543 |
| 04 | 0.001 | 0.001 | 0.0 | 0.999 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 0.0 | 0.017 | 0.0 | 0.983 |
| 08 | 0.008 | 0.016 | 0.499 | 0.477 |
| 09 | 0.515 | 0.008 | 0.446 | 0.03 |
| 10 | 0.073 | 0.54 | 0.241 | 0.147 |
| 11 | 0.16 | 0.382 | 0.219 | 0.239 |
| 12 | 0.252 | 0.281 | 0.211 | 0.256 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.043 | 0.237 | -0.127 | -0.111 |
| 02 | 0.284 | -0.049 | 0.222 | -0.752 |
| 03 | -0.838 | -0.271 | -0.458 | 0.776 |
| 04 | -5.662 | -5.446 | -6.948 | 1.384 |
| 05 | 1.386 | -6.948 | -6.948 | -6.948 |
| 06 | 1.386 | -6.948 | -6.948 | -6.948 |
| 07 | -6.948 | -2.651 | -6.948 | 1.368 |
| 08 | -3.429 | -2.738 | 0.691 | 0.645 |
| 09 | 0.723 | -3.355 | 0.578 | -2.099 |
| 10 | -1.228 | 0.769 | -0.038 | -0.533 |
| 11 | -0.444 | 0.423 | -0.134 | -0.043 |
| 12 | 0.009 | 0.117 | -0.17 | 0.022 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.766665 |
| 0.0005 | 6.19002 |
| 0.0001 | 7.66365 |