Motif | HXA5.H12CORE.0.SM.B |
Gene (human) | HOXA5 (GeneCards) |
Gene synonyms (human) | HOX1C |
Gene (mouse) | Hoxa5 |
Gene synonyms (mouse) | Hox-1.3, Hoxa-5 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXA5.H12CORE.0.SM.B |
Gene (human) | HOXA5 (GeneCards) |
Gene synonyms (human) | HOX1C |
Gene (mouse) | Hoxa5 |
Gene synonyms (mouse) | Hox-1.3, Hoxa-5 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 12 |
Consensus | nnvbTAATKRbn |
GC content | 37.44% |
Information content (bits; total / per base) | 10.382 / 0.865 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 9703 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.956 | 0.932 | 0.927 | 0.894 | 0.864 | 0.832 |
best | 0.966 | 0.946 | 0.94 | 0.912 | 0.883 | 0.854 | |
Methyl HT-SELEX, 2 experiments | median | 0.959 | 0.936 | 0.925 | 0.894 | 0.848 | 0.823 |
best | 0.966 | 0.946 | 0.94 | 0.912 | 0.883 | 0.854 | |
Non-Methyl HT-SELEX, 2 experiments | median | 0.956 | 0.932 | 0.927 | 0.894 | 0.864 | 0.832 |
best | 0.959 | 0.935 | 0.932 | 0.9 | 0.875 | 0.843 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX5 {3.1.1.5} (TFClass) |
TFClass ID | TFClass: 3.1.1.5.1 |
HGNC | HGNC:5106 |
MGI | MGI:96177 |
EntrezGene (human) | GeneID:3202 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15402 (SSTAR profile) |
UniProt ID (human) | HXA5_HUMAN |
UniProt ID (mouse) | HXA5_MOUSE |
UniProt AC (human) | P20719 (TFClass) |
UniProt AC (mouse) | P09021 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 2 |
Methyl-HT-SELEX | 2 |
PCM | HXA5.H12CORE.0.SM.B.pcm |
PWM | HXA5.H12CORE.0.SM.B.pwm |
PFM | HXA5.H12CORE.0.SM.B.pfm |
Alignment | HXA5.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXA5.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXA5.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXA5.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXA5.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 3005.25 | 1930.25 | 2337.25 | 2430.25 |
02 | 1915.5 | 3818.5 | 1949.5 | 2019.5 |
03 | 2103.0 | 3117.0 | 4118.0 | 365.0 |
04 | 426.0 | 3891.0 | 1852.0 | 3534.0 |
05 | 0.0 | 1.0 | 2.0 | 9700.0 |
06 | 9703.0 | 0.0 | 0.0 | 0.0 |
07 | 9703.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 42.0 | 0.0 | 9661.0 |
09 | 23.0 | 303.0 | 4778.0 | 4599.0 |
10 | 6016.0 | 242.0 | 3072.0 | 373.0 |
11 | 972.5 | 4579.5 | 2228.5 | 1922.5 |
12 | 2113.25 | 2818.25 | 2513.25 | 2258.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.31 | 0.199 | 0.241 | 0.25 |
02 | 0.197 | 0.394 | 0.201 | 0.208 |
03 | 0.217 | 0.321 | 0.424 | 0.038 |
04 | 0.044 | 0.401 | 0.191 | 0.364 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.004 | 0.0 | 0.996 |
09 | 0.002 | 0.031 | 0.492 | 0.474 |
10 | 0.62 | 0.025 | 0.317 | 0.038 |
11 | 0.1 | 0.472 | 0.23 | 0.198 |
12 | 0.218 | 0.29 | 0.259 | 0.233 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.214 | -0.228 | -0.037 | 0.002 |
02 | -0.236 | 0.453 | -0.218 | -0.183 |
03 | -0.143 | 0.251 | 0.529 | -1.889 |
04 | -1.735 | 0.472 | -0.27 | 0.376 |
05 | -6.964 | -6.602 | -6.337 | 1.385 |
06 | 1.386 | -6.964 | -6.964 | -6.964 |
07 | 1.386 | -6.964 | -6.964 | -6.964 |
08 | -6.964 | -4.004 | -6.964 | 1.381 |
09 | -4.564 | -2.074 | 0.677 | 0.639 |
10 | 0.908 | -2.296 | 0.236 | -1.867 |
11 | -0.913 | 0.635 | -0.085 | -0.232 |
12 | -0.138 | 0.15 | 0.035 | -0.071 |
P-value | Threshold |
---|---|
0.001 | 4.76111 |
0.0005 | 6.099665 |
0.0001 | 7.745095 |