| Motif | HXA4.H12INVIVO.0.SM.D |
| Gene (human) | HOXA4 (GeneCards) |
| Gene synonyms (human) | HOX1D |
| Gene (mouse) | Hoxa4 |
| Gene synonyms (mouse) | Hox-1.4, Hoxa-4 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXA4.H12INVIVO.0.SM.D |
| Gene (human) | HOXA4 (GeneCards) |
| Gene synonyms (human) | HOX1D |
| Gene (mouse) | Hoxa4 |
| Gene synonyms (mouse) | Hox-1.4, Hoxa-4 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 12 |
| Consensus | nnvYTAATKRbn |
| GC content | 36.78% |
| Information content (bits; total / per base) | 10.328 / 0.861 |
| Data sources | HT-SELEX + Methyl-HT-SELEX |
| Aligned words | 9562 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 2 experiments | median | 0.953 | 0.923 | 0.93 | 0.894 | 0.863 | 0.832 |
| best | 0.957 | 0.93 | 0.933 | 0.9 | 0.869 | 0.833 | |
| Methyl HT-SELEX, 1 experiments | median | 0.957 | 0.93 | 0.933 | 0.9 | 0.858 | 0.831 |
| best | 0.957 | 0.93 | 0.933 | 0.9 | 0.858 | 0.831 | |
| Non-Methyl HT-SELEX, 1 experiments | median | 0.949 | 0.917 | 0.927 | 0.888 | 0.869 | 0.833 |
| best | 0.949 | 0.917 | 0.927 | 0.888 | 0.869 | 0.833 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX4 {3.1.1.4} (TFClass) |
| TFClass ID | TFClass: 3.1.1.4.1 |
| HGNC | HGNC:5105 |
| MGI | MGI:96176 |
| EntrezGene (human) | GeneID:3201 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15401 (SSTAR profile) |
| UniProt ID (human) | HXA4_HUMAN |
| UniProt ID (mouse) | HXA4_MOUSE |
| UniProt AC (human) | Q00056 (TFClass) |
| UniProt AC (mouse) | P06798 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 1 |
| Methyl-HT-SELEX | 1 |
| PCM | HXA4.H12INVIVO.0.SM.D.pcm |
| PWM | HXA4.H12INVIVO.0.SM.D.pwm |
| PFM | HXA4.H12INVIVO.0.SM.D.pfm |
| Alignment | HXA4.H12INVIVO.0.SM.D.words.tsv |
| Threshold to P-value map | HXA4.H12INVIVO.0.SM.D.thr |
| Motif in other formats | |
| JASPAR format | HXA4.H12INVIVO.0.SM.D_jaspar_format.txt |
| MEME format | HXA4.H12INVIVO.0.SM.D_meme_format.meme |
| Transfac format | HXA4.H12INVIVO.0.SM.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 2585.0 | 2337.0 | 2497.0 | 2143.0 |
| 02 | 1992.0 | 3814.0 | 1989.0 | 1767.0 |
| 03 | 2371.0 | 2436.0 | 4179.0 | 576.0 |
| 04 | 439.0 | 3497.0 | 951.0 | 4675.0 |
| 05 | 10.0 | 13.0 | 0.0 | 9539.0 |
| 06 | 9562.0 | 0.0 | 0.0 | 0.0 |
| 07 | 9562.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 926.0 | 1.0 | 8635.0 |
| 09 | 10.0 | 106.0 | 6180.0 | 3266.0 |
| 10 | 7011.0 | 163.0 | 2130.0 | 258.0 |
| 11 | 1102.75 | 3193.75 | 2074.75 | 3190.75 |
| 12 | 1606.0 | 2922.0 | 2799.0 | 2235.0 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.27 | 0.244 | 0.261 | 0.224 |
| 02 | 0.208 | 0.399 | 0.208 | 0.185 |
| 03 | 0.248 | 0.255 | 0.437 | 0.06 |
| 04 | 0.046 | 0.366 | 0.099 | 0.489 |
| 05 | 0.001 | 0.001 | 0.0 | 0.998 |
| 06 | 1.0 | 0.0 | 0.0 | 0.0 |
| 07 | 1.0 | 0.0 | 0.0 | 0.0 |
| 08 | 0.0 | 0.097 | 0.0 | 0.903 |
| 09 | 0.001 | 0.011 | 0.646 | 0.342 |
| 10 | 0.733 | 0.017 | 0.223 | 0.027 |
| 11 | 0.115 | 0.334 | 0.217 | 0.334 |
| 12 | 0.168 | 0.306 | 0.293 | 0.234 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.078 | -0.023 | 0.044 | -0.109 |
| 02 | -0.182 | 0.467 | -0.184 | -0.302 |
| 03 | -0.008 | 0.019 | 0.558 | -1.42 |
| 04 | -1.691 | 0.38 | -0.92 | 0.67 |
| 05 | -5.271 | -5.053 | -6.951 | 1.383 |
| 06 | 1.386 | -6.951 | -6.951 | -6.951 |
| 07 | 1.386 | -6.951 | -6.951 | -6.951 |
| 08 | -6.951 | -0.947 | -6.589 | 1.284 |
| 09 | -5.271 | -3.095 | 0.949 | 0.312 |
| 10 | 1.075 | -2.673 | -0.115 | -2.218 |
| 11 | -0.773 | 0.289 | -0.142 | 0.289 |
| 12 | -0.397 | 0.201 | 0.158 | -0.067 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.84506 |
| 0.0005 | 5.981265 |
| 0.0001 | 7.728405 |