Motif | HXA2.H12CORE.0.SM.B |
Gene (human) | HOXA2 (GeneCards) |
Gene synonyms (human) | HOX1K |
Gene (mouse) | Hoxa2 |
Gene synonyms (mouse) | Hox-1.11, Hoxa-2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXA2.H12CORE.0.SM.B |
Gene (human) | HOXA2 (GeneCards) |
Gene synonyms (human) | HOX1K |
Gene (mouse) | Hoxa2 |
Gene synonyms (mouse) | Hox-1.11, Hoxa-2 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 13 |
Consensus | nvvYTAATTASvn |
GC content | 39.0% |
Information content (bits; total / per base) | 12.662 / 0.974 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8198 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 8 experiments | median | 0.986 | 0.976 | 0.975 | 0.961 | 0.934 | 0.92 |
best | 0.995 | 0.991 | 0.991 | 0.985 | 0.98 | 0.971 | |
Methyl HT-SELEX, 2 experiments | median | 0.992 | 0.986 | 0.985 | 0.977 | 0.967 | 0.955 |
best | 0.994 | 0.99 | 0.989 | 0.982 | 0.968 | 0.956 | |
Non-Methyl HT-SELEX, 6 experiments | median | 0.957 | 0.934 | 0.91 | 0.885 | 0.81 | 0.802 |
best | 0.995 | 0.991 | 0.991 | 0.985 | 0.98 | 0.971 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX2 {3.1.1.2} (TFClass) |
TFClass ID | TFClass: 3.1.1.2.1 |
HGNC | HGNC:5103 |
MGI | MGI:96174 |
EntrezGene (human) | GeneID:3199 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15399 (SSTAR profile) |
UniProt ID (human) | HXA2_HUMAN |
UniProt ID (mouse) | HXA2_MOUSE |
UniProt AC (human) | O43364 (TFClass) |
UniProt AC (mouse) | P31245 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 6 |
Methyl-HT-SELEX | 2 |
PCM | HXA2.H12CORE.0.SM.B.pcm |
PWM | HXA2.H12CORE.0.SM.B.pwm |
PFM | HXA2.H12CORE.0.SM.B.pfm |
Alignment | HXA2.H12CORE.0.SM.B.words.tsv |
Threshold to P-value map | HXA2.H12CORE.0.SM.B.thr |
Motif in other formats | |
JASPAR format | HXA2.H12CORE.0.SM.B_jaspar_format.txt |
MEME format | HXA2.H12CORE.0.SM.B_meme_format.meme |
Transfac format | HXA2.H12CORE.0.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 1861.5 | 2557.5 | 1904.5 | 1874.5 |
02 | 1341.25 | 4106.25 | 1458.25 | 1292.25 |
03 | 2175.0 | 2721.0 | 2996.0 | 306.0 |
04 | 205.0 | 5450.0 | 600.0 | 1943.0 |
05 | 0.0 | 0.0 | 0.0 | 8198.0 |
06 | 8198.0 | 0.0 | 0.0 | 0.0 |
07 | 8198.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 8198.0 |
09 | 0.0 | 92.0 | 1784.0 | 6322.0 |
10 | 7558.0 | 8.0 | 612.0 | 20.0 |
11 | 420.0 | 5246.0 | 1775.0 | 757.0 |
12 | 1310.25 | 3297.25 | 2470.25 | 1120.25 |
13 | 1791.5 | 2737.5 | 1752.5 | 1916.5 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.227 | 0.312 | 0.232 | 0.229 |
02 | 0.164 | 0.501 | 0.178 | 0.158 |
03 | 0.265 | 0.332 | 0.365 | 0.037 |
04 | 0.025 | 0.665 | 0.073 | 0.237 |
05 | 0.0 | 0.0 | 0.0 | 1.0 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 1.0 | 0.0 | 0.0 | 0.0 |
08 | 0.0 | 0.0 | 0.0 | 1.0 |
09 | 0.0 | 0.011 | 0.218 | 0.771 |
10 | 0.922 | 0.001 | 0.075 | 0.002 |
11 | 0.051 | 0.64 | 0.217 | 0.092 |
12 | 0.16 | 0.402 | 0.301 | 0.137 |
13 | 0.219 | 0.334 | 0.214 | 0.234 |
A | C | G | T | |
---|---|---|---|---|
01 | -0.096 | 0.221 | -0.073 | -0.089 |
02 | -0.423 | 0.694 | -0.34 | -0.461 |
03 | 0.059 | 0.283 | 0.379 | -1.896 |
04 | -2.293 | 0.977 | -1.226 | -0.053 |
05 | -6.814 | -6.814 | -6.814 | 1.385 |
06 | 1.385 | -6.814 | -6.814 | -6.814 |
07 | 1.385 | -6.814 | -6.814 | -6.814 |
08 | -6.814 | -6.814 | -6.814 | 1.385 |
09 | -6.814 | -3.08 | -0.139 | 1.126 |
10 | 1.304 | -5.299 | -1.206 | -4.524 |
11 | -1.581 | 0.939 | -0.144 | -0.994 |
12 | -0.447 | 0.475 | 0.187 | -0.603 |
13 | -0.134 | 0.289 | -0.156 | -0.067 |
P-value | Threshold |
---|---|
0.001 | 2.43861 |
0.0005 | 4.55761 |
0.0001 | 7.564425 |