MotifHXA13.H12INVITRO.1.SM.B
Gene (human)HOXA13
(GeneCards)
Gene synonyms (human)HOX1J
Gene (mouse)Hoxa13
Gene synonyms (mouse)Hox-1.10
LOGO
LOGO (reverse complement)
Motif subtype1
Quality
B
Motif length12
ConsensusndTTTACGAGvn
GC content40.07%
Information content (bits; total / per base)13.598 / 1.133
Data sourcesHT-SELEX + Methyl-HT-SELEX
Aligned words8693

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 4 (27) 0.858 0.92 0.77 0.859 0.779 0.863 2.743 3.818 83.745 215.409

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.998 0.996 0.992 0.989 0.937 0.926
best 0.999 0.999 0.998 0.997 0.973 0.97
Methyl HT-SELEX, 2 experiments median 0.999 0.998 0.995 0.993 0.944 0.943
best 0.999 0.999 0.998 0.997 0.972 0.969
Non-Methyl HT-SELEX, 3 experiments median 0.996 0.993 0.984 0.978 0.937 0.926
best 0.999 0.999 0.998 0.997 0.973 0.97
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.14
HGNCHGNC:5102
MGIMGI:96173
EntrezGene (human)GeneID:3209
(SSTAR profile)
EntrezGene (mouse)GeneID:15398
(SSTAR profile)
UniProt ID (human)HXA13_HUMAN
UniProt ID (mouse)HXA13_MOUSE
UniProt AC (human)P31271
(TFClass)
UniProt AC (mouse)Q62424
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 4 mouse
HT-SELEX 3
Methyl-HT-SELEX 2
PCM
ACGT
012209.51674.52791.52017.5
021633.75861.751872.754324.75
03277.046.0280.08090.0
04113.011.015.08554.0
05864.021.08.07800.0
068689.00.00.04.0
070.07522.00.01171.0
0884.02.08559.048.0
098495.036.0118.044.0
1052.0695.07338.0608.0
111581.53234.52661.51215.5
121772.751895.752154.752869.75
PFM
ACGT
010.2540.1930.3210.232
020.1880.0990.2150.497
030.0320.0050.0320.931
040.0130.0010.0020.984
050.0990.0020.0010.897
061.00.00.00.0
070.00.8650.00.135
080.010.00.9850.006
090.9770.0040.0140.005
100.0060.080.8440.07
110.1820.3720.3060.14
120.2040.2180.2480.33
PWM
ACGT
010.017-0.260.25-0.074
02-0.285-0.923-0.1490.688
03-2.053-3.808-2.0421.314
04-2.938-5.1-4.8361.369
05-0.921-4.538-5.3561.277
061.385-6.866-6.866-5.85
07-6.8661.241-6.866-0.617
08-3.228-6.2341.37-3.768
091.362-4.04-2.895-3.851
10-3.691-1.1381.216-1.271
11-0.3170.3970.202-0.58
12-0.203-0.136-0.0090.278
Standard thresholds
P-value Threshold
0.001 2.76068
0.0005 4.114185
0.0001 6.906205