MotifHXA13.H12INVITRO.0.P.B
Gene (human)HOXA13
(GeneCards)
Gene synonyms (human)HOX1J
Gene (mouse)Hoxa13
Gene synonyms (mouse)Hox-1.10
LOGO
LOGO (reverse complement)
Motif subtype0
Quality
B
Motif length10
ConsensusdTTTTATKRG
GC content25.38%
Information content (bits; total / per base)13.642 / 1.364
Data sourcesChIP-Seq
Aligned words1027

ChIP-Seq benchmarking Num. of experiments (peaksets) auROC, median auROC, best auPRC, median auPRC, best pseudo-auROC, median pseudo-auROC, best pseudo-log-auROC, median pseudo-log-auROC, best Centrality, median Centrality, best
Mouse 4 (27) 0.933 0.97 0.884 0.929 0.898 0.942 3.323 3.654 152.886 393.092

HT-SELEX benchmarking auROC10 auPRC10 auROC25 auPRC25 auROC50 auPRC50
Overall, 5 experiments median 0.982 0.953 0.974 0.955 0.946 0.926
best 0.984 0.964 0.988 0.972 0.972 0.957
Methyl HT-SELEX, 2 experiments median 0.981 0.952 0.973 0.95 0.918 0.9
best 0.983 0.953 0.981 0.96 0.946 0.927
Non-Methyl HT-SELEX, 3 experiments median 0.982 0.963 0.974 0.955 0.947 0.926
best 0.984 0.964 0.988 0.972 0.972 0.957
TF superclassHelix-turn-helix domains {3} (TFClass)
TF classHomeo domain factors {3.1} (TFClass)
TF familyHOX-related {3.1.1} (TFClass)
TF subfamilyHOX9-13 {3.1.1.8} (TFClass)
TFClass IDTFClass: 3.1.1.8.14
HGNCHGNC:5102
MGIMGI:96173
EntrezGene (human)GeneID:3209
(SSTAR profile)
EntrezGene (mouse)GeneID:15398
(SSTAR profile)
UniProt ID (human)HXA13_HUMAN
UniProt ID (mouse)HXA13_MOUSE
UniProt AC (human)P31271
(TFClass)
UniProt AC (mouse)Q62424
(TFClass)
GRECO-DB-TF
yes
ChIP-Seq 0 human, 4 mouse
HT-SELEX 3
Methyl-HT-SELEX 2
PCM
ACGT
01348.063.0222.0394.0
0232.016.033.0946.0
030.03.02.01022.0
041.01.02.01023.0
0539.07.01.0980.0
061018.01.04.04.0
073.0285.01.0738.0
0833.03.0517.0474.0
09594.01.0426.06.0
103.076.0943.05.0
PFM
ACGT
010.3390.0610.2160.384
020.0310.0160.0320.921
030.00.0030.0020.995
040.0010.0010.0020.996
050.0380.0070.0010.954
060.9910.0010.0040.004
070.0030.2780.0010.719
080.0320.0030.5030.462
090.5780.0010.4150.006
100.0030.0740.9180.005
PWM
ACGT
010.302-1.385-0.1440.426
02-2.036-2.679-2.0071.299
03-5.005-4.0-4.2371.376
04-4.549-4.549-4.2371.377
05-1.848-3.388-4.5491.334
061.372-4.549-3.808-3.808
07-4.00.104-4.5491.051
08-2.007-4.00.6970.61
090.835-4.5490.504-3.509
10-4.0-1.2021.296-3.648
Standard thresholds
P-value Threshold
0.001 2.79263
0.0005 4.39223
0.0001 6.82154