Motif | HXA13.H12CORE.1.SM.B |
Gene (human) | HOXA13 (GeneCards) |
Gene synonyms (human) | HOX1J |
Gene (mouse) | Hoxa13 |
Gene synonyms (mouse) | Hox-1.10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | HXA13.H12CORE.1.SM.B |
Gene (human) | HOXA13 (GeneCards) |
Gene synonyms (human) | HOX1J |
Gene (mouse) | Hoxa13 |
Gene synonyms (mouse) | Hox-1.10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 12 |
Consensus | ndTTTACGAGvn |
GC content | 40.07% |
Information content (bits; total / per base) | 13.598 / 1.133 |
Data sources | HT-SELEX + Methyl-HT-SELEX |
Aligned words | 8693 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 4 (27) | 0.858 | 0.92 | 0.77 | 0.859 | 0.779 | 0.863 | 2.743 | 3.818 | 83.745 | 215.409 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.998 | 0.996 | 0.992 | 0.989 | 0.937 | 0.926 |
best | 0.999 | 0.999 | 0.998 | 0.997 | 0.973 | 0.97 | |
Methyl HT-SELEX, 2 experiments | median | 0.999 | 0.998 | 0.995 | 0.993 | 0.944 | 0.943 |
best | 0.999 | 0.999 | 0.998 | 0.997 | 0.972 | 0.969 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.996 | 0.993 | 0.984 | 0.978 | 0.937 | 0.926 |
best | 0.999 | 0.999 | 0.998 | 0.997 | 0.973 | 0.97 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.14 |
HGNC | HGNC:5102 |
MGI | MGI:96173 |
EntrezGene (human) | GeneID:3209 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15398 (SSTAR profile) |
UniProt ID (human) | HXA13_HUMAN |
UniProt ID (mouse) | HXA13_MOUSE |
UniProt AC (human) | P31271 (TFClass) |
UniProt AC (mouse) | Q62424 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 4 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 2 |
PCM | HXA13.H12CORE.1.SM.B.pcm |
PWM | HXA13.H12CORE.1.SM.B.pwm |
PFM | HXA13.H12CORE.1.SM.B.pfm |
Alignment | HXA13.H12CORE.1.SM.B.words.tsv |
Threshold to P-value map | HXA13.H12CORE.1.SM.B.thr |
Motif in other formats | |
JASPAR format | HXA13.H12CORE.1.SM.B_jaspar_format.txt |
MEME format | HXA13.H12CORE.1.SM.B_meme_format.meme |
Transfac format | HXA13.H12CORE.1.SM.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 2209.5 | 1674.5 | 2791.5 | 2017.5 |
02 | 1633.75 | 861.75 | 1872.75 | 4324.75 |
03 | 277.0 | 46.0 | 280.0 | 8090.0 |
04 | 113.0 | 11.0 | 15.0 | 8554.0 |
05 | 864.0 | 21.0 | 8.0 | 7800.0 |
06 | 8689.0 | 0.0 | 0.0 | 4.0 |
07 | 0.0 | 7522.0 | 0.0 | 1171.0 |
08 | 84.0 | 2.0 | 8559.0 | 48.0 |
09 | 8495.0 | 36.0 | 118.0 | 44.0 |
10 | 52.0 | 695.0 | 7338.0 | 608.0 |
11 | 1581.5 | 3234.5 | 2661.5 | 1215.5 |
12 | 1772.75 | 1895.75 | 2154.75 | 2869.75 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.254 | 0.193 | 0.321 | 0.232 |
02 | 0.188 | 0.099 | 0.215 | 0.497 |
03 | 0.032 | 0.005 | 0.032 | 0.931 |
04 | 0.013 | 0.001 | 0.002 | 0.984 |
05 | 0.099 | 0.002 | 0.001 | 0.897 |
06 | 1.0 | 0.0 | 0.0 | 0.0 |
07 | 0.0 | 0.865 | 0.0 | 0.135 |
08 | 0.01 | 0.0 | 0.985 | 0.006 |
09 | 0.977 | 0.004 | 0.014 | 0.005 |
10 | 0.006 | 0.08 | 0.844 | 0.07 |
11 | 0.182 | 0.372 | 0.306 | 0.14 |
12 | 0.204 | 0.218 | 0.248 | 0.33 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.017 | -0.26 | 0.25 | -0.074 |
02 | -0.285 | -0.923 | -0.149 | 0.688 |
03 | -2.053 | -3.808 | -2.042 | 1.314 |
04 | -2.938 | -5.1 | -4.836 | 1.369 |
05 | -0.921 | -4.538 | -5.356 | 1.277 |
06 | 1.385 | -6.866 | -6.866 | -5.85 |
07 | -6.866 | 1.241 | -6.866 | -0.617 |
08 | -3.228 | -6.234 | 1.37 | -3.768 |
09 | 1.362 | -4.04 | -2.895 | -3.851 |
10 | -3.691 | -1.138 | 1.216 | -1.271 |
11 | -0.317 | 0.397 | 0.202 | -0.58 |
12 | -0.203 | -0.136 | -0.009 | 0.278 |
P-value | Threshold |
---|---|
0.001 | 2.76068 |
0.0005 | 4.114185 |
0.0001 | 6.906205 |