Motif | HXA13.H12CORE.0.P.B |
Gene (human) | HOXA13 (GeneCards) |
Gene synonyms (human) | HOX1J |
Gene (mouse) | Hoxa13 |
Gene synonyms (mouse) | Hox-1.10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif | HXA13.H12CORE.0.P.B |
Gene (human) | HOXA13 (GeneCards) |
Gene synonyms (human) | HOX1J |
Gene (mouse) | Hoxa13 |
Gene synonyms (mouse) | Hox-1.10 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 0 |
Quality | B |
Motif length | 10 |
Consensus | dTTTTATKRG |
GC content | 25.38% |
Information content (bits; total / per base) | 13.642 / 1.364 |
Data sources | ChIP-Seq |
Aligned words | 1027 |
ChIP-Seq benchmarking | Num. of experiments (peaksets) | auROC, median | auROC, best | auPRC, median | auPRC, best | pseudo-auROC, median | pseudo-auROC, best | pseudo-log-auROC, median | pseudo-log-auROC, best | Centrality, median | Centrality, best |
---|---|---|---|---|---|---|---|---|---|---|---|
Mouse | 4 (27) | 0.933 | 0.97 | 0.884 | 0.929 | 0.898 | 0.942 | 3.323 | 3.654 | 152.886 | 393.092 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 5 experiments | median | 0.982 | 0.953 | 0.974 | 0.955 | 0.946 | 0.926 |
best | 0.984 | 0.964 | 0.988 | 0.972 | 0.972 | 0.957 | |
Methyl HT-SELEX, 2 experiments | median | 0.981 | 0.952 | 0.973 | 0.95 | 0.918 | 0.9 |
best | 0.983 | 0.953 | 0.981 | 0.96 | 0.946 | 0.927 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.982 | 0.963 | 0.974 | 0.955 | 0.947 | 0.926 |
best | 0.984 | 0.964 | 0.988 | 0.972 | 0.972 | 0.957 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
TFClass ID | TFClass: 3.1.1.8.14 |
HGNC | HGNC:5102 |
MGI | MGI:96173 |
EntrezGene (human) | GeneID:3209 (SSTAR profile) |
EntrezGene (mouse) | GeneID:15398 (SSTAR profile) |
UniProt ID (human) | HXA13_HUMAN |
UniProt ID (mouse) | HXA13_MOUSE |
UniProt AC (human) | P31271 (TFClass) |
UniProt AC (mouse) | Q62424 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 4 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 2 |
PCM | HXA13.H12CORE.0.P.B.pcm |
PWM | HXA13.H12CORE.0.P.B.pwm |
PFM | HXA13.H12CORE.0.P.B.pfm |
Alignment | HXA13.H12CORE.0.P.B.words.tsv |
Threshold to P-value map | HXA13.H12CORE.0.P.B.thr |
Motif in other formats | |
JASPAR format | HXA13.H12CORE.0.P.B_jaspar_format.txt |
MEME format | HXA13.H12CORE.0.P.B_meme_format.meme |
Transfac format | HXA13.H12CORE.0.P.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 348.0 | 63.0 | 222.0 | 394.0 |
02 | 32.0 | 16.0 | 33.0 | 946.0 |
03 | 0.0 | 3.0 | 2.0 | 1022.0 |
04 | 1.0 | 1.0 | 2.0 | 1023.0 |
05 | 39.0 | 7.0 | 1.0 | 980.0 |
06 | 1018.0 | 1.0 | 4.0 | 4.0 |
07 | 3.0 | 285.0 | 1.0 | 738.0 |
08 | 33.0 | 3.0 | 517.0 | 474.0 |
09 | 594.0 | 1.0 | 426.0 | 6.0 |
10 | 3.0 | 76.0 | 943.0 | 5.0 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.339 | 0.061 | 0.216 | 0.384 |
02 | 0.031 | 0.016 | 0.032 | 0.921 |
03 | 0.0 | 0.003 | 0.002 | 0.995 |
04 | 0.001 | 0.001 | 0.002 | 0.996 |
05 | 0.038 | 0.007 | 0.001 | 0.954 |
06 | 0.991 | 0.001 | 0.004 | 0.004 |
07 | 0.003 | 0.278 | 0.001 | 0.719 |
08 | 0.032 | 0.003 | 0.503 | 0.462 |
09 | 0.578 | 0.001 | 0.415 | 0.006 |
10 | 0.003 | 0.074 | 0.918 | 0.005 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.302 | -1.385 | -0.144 | 0.426 |
02 | -2.036 | -2.679 | -2.007 | 1.299 |
03 | -5.005 | -4.0 | -4.237 | 1.376 |
04 | -4.549 | -4.549 | -4.237 | 1.377 |
05 | -1.848 | -3.388 | -4.549 | 1.334 |
06 | 1.372 | -4.549 | -3.808 | -3.808 |
07 | -4.0 | 0.104 | -4.549 | 1.051 |
08 | -2.007 | -4.0 | 0.697 | 0.61 |
09 | 0.835 | -4.549 | 0.504 | -3.509 |
10 | -4.0 | -1.202 | 1.296 | -3.648 |
P-value | Threshold |
---|---|
0.001 | 2.79263 |
0.0005 | 4.39223 |
0.0001 | 6.82154 |