| Motif | HXA10.H12INVIVO.1.M.D |
| Gene (human) | HOXA10 (GeneCards) |
| Gene synonyms (human) | HOX1H |
| Gene (mouse) | Hoxa10 |
| Gene synonyms (mouse) | Hox-1.8, Hoxa-10 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 1 |
| Quality | D |
| Motif | HXA10.H12INVIVO.1.M.D |
| Gene (human) | HOXA10 (GeneCards) |
| Gene synonyms (human) | HOX1H |
| Gene (mouse) | Hoxa10 |
| Gene synonyms (mouse) | Hox-1.8, Hoxa-10 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 1 |
| Quality | D |
| Motif length | 11 |
| Consensus | dTTTACGAYbn |
| GC content | 36.97% |
| Information content (bits; total / per base) | 12.085 / 1.099 |
| Data sources | Methyl-HT-SELEX |
| Aligned words | 2176 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 8 experiments | median | 0.958 | 0.936 | 0.893 | 0.866 | 0.798 | 0.778 |
| best | 0.998 | 0.996 | 0.989 | 0.986 | 0.902 | 0.892 | |
| Methyl HT-SELEX, 3 experiments | median | 0.977 | 0.964 | 0.935 | 0.914 | 0.846 | 0.828 |
| best | 0.998 | 0.996 | 0.989 | 0.986 | 0.889 | 0.892 | |
| Non-Methyl HT-SELEX, 5 experiments | median | 0.9 | 0.869 | 0.803 | 0.772 | 0.703 | 0.69 |
| best | 0.994 | 0.99 | 0.975 | 0.968 | 0.902 | 0.892 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.5 |
| HGNC | HGNC:5100 |
| MGI | MGI:96171 |
| EntrezGene (human) | GeneID:3206 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15395 (SSTAR profile) |
| UniProt ID (human) | HXA10_HUMAN |
| UniProt ID (mouse) | HXA10_MOUSE |
| UniProt AC (human) | P31260 (TFClass) |
| UniProt AC (mouse) | P31310 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 3 |
| PCM | HXA10.H12INVIVO.1.M.D.pcm |
| PWM | HXA10.H12INVIVO.1.M.D.pwm |
| PFM | HXA10.H12INVIVO.1.M.D.pfm |
| Alignment | HXA10.H12INVIVO.1.M.D.words.tsv |
| Threshold to P-value map | HXA10.H12INVIVO.1.M.D.thr |
| Motif in other formats | |
| JASPAR format | HXA10.H12INVIVO.1.M.D_jaspar_format.txt |
| MEME format | HXA10.H12INVIVO.1.M.D_meme_format.meme |
| Transfac format | HXA10.H12INVIVO.1.M.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 465.0 | 382.0 | 397.0 | 932.0 |
| 02 | 234.5 | 28.5 | 123.5 | 1789.5 |
| 03 | 24.0 | 8.0 | 5.0 | 2139.0 |
| 04 | 842.0 | 6.0 | 0.0 | 1328.0 |
| 05 | 2176.0 | 0.0 | 0.0 | 0.0 |
| 06 | 1.0 | 1793.0 | 0.0 | 382.0 |
| 07 | 0.0 | 4.0 | 2148.0 | 24.0 |
| 08 | 2140.0 | 5.0 | 28.0 | 3.0 |
| 09 | 5.0 | 1335.0 | 217.0 | 619.0 |
| 10 | 305.0 | 960.0 | 543.0 | 368.0 |
| 11 | 488.25 | 534.25 | 332.25 | 821.25 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.214 | 0.176 | 0.182 | 0.428 |
| 02 | 0.108 | 0.013 | 0.057 | 0.822 |
| 03 | 0.011 | 0.004 | 0.002 | 0.983 |
| 04 | 0.387 | 0.003 | 0.0 | 0.61 |
| 05 | 1.0 | 0.0 | 0.0 | 0.0 |
| 06 | 0.0 | 0.824 | 0.0 | 0.176 |
| 07 | 0.0 | 0.002 | 0.987 | 0.011 |
| 08 | 0.983 | 0.002 | 0.013 | 0.001 |
| 09 | 0.002 | 0.614 | 0.1 | 0.284 |
| 10 | 0.14 | 0.441 | 0.25 | 0.169 |
| 11 | 0.224 | 0.246 | 0.153 | 0.377 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.156 | -0.352 | -0.314 | 0.537 |
| 02 | -0.837 | -2.887 | -1.471 | 1.188 |
| 03 | -3.047 | -4.008 | -4.368 | 1.367 |
| 04 | 0.436 | -4.233 | -5.649 | 0.89 |
| 05 | 1.384 | -5.649 | -5.649 | -5.649 |
| 06 | -5.23 | 1.19 | -5.649 | -0.352 |
| 07 | -5.649 | -4.524 | 1.371 | -3.047 |
| 08 | 1.367 | -4.368 | -2.904 | -4.709 |
| 09 | -4.368 | 0.896 | -0.914 | 0.129 |
| 10 | -0.576 | 0.566 | -0.002 | -0.389 |
| 11 | -0.108 | -0.018 | -0.491 | 0.411 |
| P-value | Threshold |
|---|---|
| 0.001 | 3.5245 |
| 0.0005 | 4.857075 |
| 0.0001 | 7.61619 |