| Motif | HXA10.H12INVIVO.0.S.D |
| Gene (human) | HOXA10 (GeneCards) |
| Gene synonyms (human) | HOX1H |
| Gene (mouse) | Hoxa10 |
| Gene synonyms (mouse) | Hox-1.8, Hoxa-10 |
| LOGO |  |
| LOGO (reverse complement) |  |
| Motif subtype | 0 |
| Quality | D |
| Motif | HXA10.H12INVIVO.0.S.D |
| Gene (human) | HOXA10 (GeneCards) |
| Gene synonyms (human) | HOX1H |
| Gene (mouse) | Hoxa10 |
| Gene synonyms (mouse) | Hox-1.8, Hoxa-10 |
| LOGO | |
| LOGO (reverse complement) | |
| Motif subtype | 0 |
| Quality | D |
| Motif length | 10 |
| Consensus | dTTWATGRbn |
| GC content | 30.27% |
| Information content (bits; total / per base) | 9.886 / 0.989 |
| Data sources | HT-SELEX |
| Aligned words | 8657 |
| HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
|---|---|---|---|---|---|---|---|
| Overall, 8 experiments | median | 0.942 | 0.905 | 0.918 | 0.877 | 0.836 | 0.806 |
| best | 0.987 | 0.976 | 0.982 | 0.969 | 0.949 | 0.933 | |
| Methyl HT-SELEX, 3 experiments | median | 0.956 | 0.926 | 0.938 | 0.902 | 0.869 | 0.838 |
| best | 0.987 | 0.976 | 0.982 | 0.969 | 0.905 | 0.9 | |
| Non-Methyl HT-SELEX, 5 experiments | median | 0.929 | 0.885 | 0.869 | 0.83 | 0.747 | 0.735 |
| best | 0.986 | 0.976 | 0.978 | 0.965 | 0.949 | 0.933 | |
| TF superclass | Helix-turn-helix domains {3} (TFClass) |
| TF class | Homeo domain factors {3.1} (TFClass) |
| TF family | HOX-related {3.1.1} (TFClass) |
| TF subfamily | HOX9-13 {3.1.1.8} (TFClass) |
| TFClass ID | TFClass: 3.1.1.8.5 |
| HGNC | HGNC:5100 |
| MGI | MGI:96171 |
| EntrezGene (human) | GeneID:3206 (SSTAR profile) |
| EntrezGene (mouse) | GeneID:15395 (SSTAR profile) |
| UniProt ID (human) | HXA10_HUMAN |
| UniProt ID (mouse) | HXA10_MOUSE |
| UniProt AC (human) | P31260 (TFClass) |
| UniProt AC (mouse) | P31310 (TFClass) |
| GRECO-DB-TF | yes |
| ChIP-Seq | 0 human, 0 mouse |
| HT-SELEX | 5 |
| Methyl-HT-SELEX | 3 |
| PCM | HXA10.H12INVIVO.0.S.D.pcm |
| PWM | HXA10.H12INVIVO.0.S.D.pwm |
| PFM | HXA10.H12INVIVO.0.S.D.pfm |
| Alignment | HXA10.H12INVIVO.0.S.D.words.tsv |
| Threshold to P-value map | HXA10.H12INVIVO.0.S.D.thr |
| Motif in other formats | |
| JASPAR format | HXA10.H12INVIVO.0.S.D_jaspar_format.txt |
| MEME format | HXA10.H12INVIVO.0.S.D_meme_format.meme |
| Transfac format | HXA10.H12INVIVO.0.S.D_transfac_format.txt |
| Homer format | |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 1875.5 | 1343.5 | 1504.5 | 3933.5 |
| 02 | 462.75 | 144.75 | 520.75 | 7528.75 |
| 03 | 4.0 | 2.0 | 44.0 | 8607.0 |
| 04 | 3938.0 | 2.0 | 35.0 | 4682.0 |
| 05 | 8626.0 | 0.0 | 31.0 | 0.0 |
| 06 | 0.0 | 2246.0 | 1.0 | 6410.0 |
| 07 | 0.0 | 44.0 | 6418.0 | 2195.0 |
| 08 | 5948.0 | 59.0 | 2350.0 | 300.0 |
| 09 | 353.25 | 4581.25 | 2068.25 | 1654.25 |
| 10 | 1890.75 | 2656.75 | 2155.75 | 1953.75 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | 0.217 | 0.155 | 0.174 | 0.454 |
| 02 | 0.053 | 0.017 | 0.06 | 0.87 |
| 03 | 0.0 | 0.0 | 0.005 | 0.994 |
| 04 | 0.455 | 0.0 | 0.004 | 0.541 |
| 05 | 0.996 | 0.0 | 0.004 | 0.0 |
| 06 | 0.0 | 0.259 | 0.0 | 0.74 |
| 07 | 0.0 | 0.005 | 0.741 | 0.254 |
| 08 | 0.687 | 0.007 | 0.271 | 0.035 |
| 09 | 0.041 | 0.529 | 0.239 | 0.191 |
| 10 | 0.218 | 0.307 | 0.249 | 0.226 |
| A | C | G | T | |
|---|---|---|---|---|
| 01 | -0.143 | -0.476 | -0.363 | 0.597 |
| 02 | -1.539 | -2.69 | -1.421 | 1.246 |
| 03 | -5.846 | -6.23 | -3.846 | 1.38 |
| 04 | 0.598 | -6.23 | -4.063 | 0.771 |
| 05 | 1.382 | -6.863 | -4.176 | -6.863 |
| 06 | -6.863 | 0.037 | -6.497 | 1.085 |
| 07 | -6.863 | -3.846 | 1.086 | 0.014 |
| 08 | 1.01 | -3.566 | 0.082 | -1.97 |
| 09 | -1.807 | 0.749 | -0.045 | -0.268 |
| 10 | -0.135 | 0.205 | -0.004 | -0.102 |
| P-value | Threshold |
|---|---|
| 0.001 | 4.891895 |
| 0.0005 | 6.069995 |
| 0.0001 | 7.507925 |