Motif | HXA1.H12CORE.1.S.B |
Gene (human) | HOXA1 (GeneCards) |
Gene synonyms (human) | HOX1F |
Gene (mouse) | Hoxa1 |
Gene synonyms (mouse) | Era-1, Hox-1.6, Hoxa-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif | HXA1.H12CORE.1.S.B |
Gene (human) | HOXA1 (GeneCards) |
Gene synonyms (human) | HOX1F |
Gene (mouse) | Hoxa1 |
Gene synonyms (mouse) | Era-1, Hox-1.6, Hoxa-1 |
LOGO | |
LOGO (reverse complement) | |
Motif subtype | 1 |
Quality | B |
Motif length | 17 |
Consensus | hWWWdhvvbTAATTAvn |
GC content | 25.16% |
Information content (bits; total / per base) | 14.836 / 0.873 |
Data sources | HT-SELEX |
Aligned words | 1696 |
HT-SELEX benchmarking | auROC10 | auPRC10 | auROC25 | auPRC25 | auROC50 | auPRC50 | |
---|---|---|---|---|---|---|---|
Overall, 4 experiments | median | 0.935 | 0.908 | 0.86 | 0.836 | 0.76 | 0.753 |
best | 0.969 | 0.95 | 0.952 | 0.926 | 0.922 | 0.891 | |
Methyl HT-SELEX, 1 experiments | median | 0.964 | 0.942 | 0.94 | 0.911 | 0.865 | 0.842 |
best | 0.964 | 0.942 | 0.94 | 0.911 | 0.865 | 0.842 | |
Non-Methyl HT-SELEX, 3 experiments | median | 0.906 | 0.873 | 0.779 | 0.761 | 0.654 | 0.665 |
best | 0.969 | 0.95 | 0.952 | 0.926 | 0.922 | 0.891 |
TF superclass | Helix-turn-helix domains {3} (TFClass) |
TF class | Homeo domain factors {3.1} (TFClass) |
TF family | HOX-related {3.1.1} (TFClass) |
TF subfamily | HOX1 {3.1.1.1} (TFClass) |
TFClass ID | TFClass: 3.1.1.1.1 |
HGNC | HGNC:5099 |
MGI | MGI:96170 |
EntrezGene (human) | GeneID:3198 (SSTAR profile) |
EntrezGene (mouse) | |
UniProt ID (human) | HXA1_HUMAN |
UniProt ID (mouse) | HXA1_MOUSE |
UniProt AC (human) | P49639 (TFClass) |
UniProt AC (mouse) | P09022 (TFClass) |
GRECO-DB-TF | yes |
ChIP-Seq | 0 human, 0 mouse |
HT-SELEX | 3 |
Methyl-HT-SELEX | 1 |
PCM | HXA1.H12CORE.1.S.B.pcm |
PWM | HXA1.H12CORE.1.S.B.pwm |
PFM | HXA1.H12CORE.1.S.B.pfm |
Alignment | HXA1.H12CORE.1.S.B.words.tsv |
Threshold to P-value map | HXA1.H12CORE.1.S.B.thr |
Motif in other formats | |
JASPAR format | HXA1.H12CORE.1.S.B_jaspar_format.txt |
MEME format | HXA1.H12CORE.1.S.B_meme_format.meme |
Transfac format | HXA1.H12CORE.1.S.B_transfac_format.txt |
Homer format |
A | C | G | T | |
---|---|---|---|---|
01 | 665.5 | 229.5 | 187.5 | 613.5 |
02 | 436.25 | 120.25 | 76.25 | 1063.25 |
03 | 795.0 | 68.0 | 144.0 | 689.0 |
04 | 1064.0 | 82.0 | 158.0 | 392.0 |
05 | 487.0 | 135.0 | 172.0 | 902.0 |
06 | 331.0 | 358.0 | 313.0 | 694.0 |
07 | 793.0 | 334.0 | 329.0 | 240.0 |
08 | 363.0 | 598.0 | 652.0 | 83.0 |
09 | 42.0 | 728.0 | 408.0 | 518.0 |
10 | 0.0 | 2.0 | 0.0 | 1694.0 |
11 | 1693.0 | 0.0 | 3.0 | 0.0 |
12 | 1696.0 | 0.0 | 0.0 | 0.0 |
13 | 0.0 | 0.0 | 0.0 | 1696.0 |
14 | 0.0 | 29.0 | 6.0 | 1661.0 |
15 | 1608.0 | 0.0 | 88.0 | 0.0 |
16 | 432.75 | 639.75 | 556.75 | 66.75 |
17 | 396.25 | 530.25 | 306.25 | 463.25 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.392 | 0.135 | 0.111 | 0.362 |
02 | 0.257 | 0.071 | 0.045 | 0.627 |
03 | 0.469 | 0.04 | 0.085 | 0.406 |
04 | 0.627 | 0.048 | 0.093 | 0.231 |
05 | 0.287 | 0.08 | 0.101 | 0.532 |
06 | 0.195 | 0.211 | 0.185 | 0.409 |
07 | 0.468 | 0.197 | 0.194 | 0.142 |
08 | 0.214 | 0.353 | 0.384 | 0.049 |
09 | 0.025 | 0.429 | 0.241 | 0.305 |
10 | 0.0 | 0.001 | 0.0 | 0.999 |
11 | 0.998 | 0.0 | 0.002 | 0.0 |
12 | 1.0 | 0.0 | 0.0 | 0.0 |
13 | 0.0 | 0.0 | 0.0 | 1.0 |
14 | 0.0 | 0.017 | 0.004 | 0.979 |
15 | 0.948 | 0.0 | 0.052 | 0.0 |
16 | 0.255 | 0.377 | 0.328 | 0.039 |
17 | 0.234 | 0.313 | 0.181 | 0.273 |
A | C | G | T | |
---|---|---|---|---|
01 | 0.449 | -0.61 | -0.81 | 0.368 |
02 | 0.028 | -1.249 | -1.696 | 0.917 |
03 | 0.627 | -1.808 | -1.071 | 0.484 |
04 | 0.917 | -1.625 | -0.98 | -0.078 |
05 | 0.138 | -1.135 | -0.896 | 0.753 |
06 | -0.246 | -0.168 | -0.302 | 0.491 |
07 | 0.624 | -0.237 | -0.252 | -0.566 |
08 | -0.155 | 0.343 | 0.429 | -1.613 |
09 | -2.273 | 0.539 | -0.038 | 0.199 |
10 | -5.434 | -4.704 | -5.434 | 1.382 |
11 | 1.381 | -5.434 | -4.473 | -5.434 |
12 | 1.383 | -5.434 | -5.434 | -5.434 |
13 | -5.434 | -5.434 | -5.434 | 1.383 |
14 | -5.434 | -2.625 | -3.992 | 1.362 |
15 | 1.33 | -5.434 | -1.556 | -5.434 |
16 | 0.02 | 0.41 | 0.271 | -1.826 |
17 | -0.067 | 0.223 | -0.324 | 0.088 |
P-value | Threshold |
---|---|
0.001 | 1.84371 |
0.0005 | 3.29191 |
0.0001 | 6.54726 |